NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0224545_1005393

Scaffold Ga0224545_1005393


Overview

Basic Information
Taxon OID3300022881 Open in IMG/M
Scaffold IDGa0224545_1005393 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Stordalen Mire, Sweden - 717 P1 20-24
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2086
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location NameSweden: Norrbotten County, Stordalen Mire
CoordinatesLat. (o)68.3533Long. (o)19.0471Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F068013Metagenome / Metatranscriptome125Y
F071728Metagenome / Metatranscriptome122Y

Sequences

Protein IDFamilyRBSSequence
Ga0224545_10053933F068013GGAGMSGKQNDERFNERVVRCRDRVLTSWACASLLRPDLSPAGKEKLAKKILKLAESKDHRLGITPAQAQEIVLSNLQCIAKNCPLLIFADPLARELNAFFQDN
Ga0224545_10053934F071728GGAGGMSKPERAVRRVHLRVNGIAFESVRIRHDLGANDSDILIDDPHIGRFALTAAVPSLELQEEGSDWRHVTLDELKKILADGGELAEAAEEPRASEAAERESFNRLVAEGEHIRVTRIASSVSPVLTKTPPGKSR
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