NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247770_1007073

Scaffold Ga0247770_1007073


Overview

Basic Information
Taxon OID3300022891 Open in IMG/M
Scaffold IDGa0247770_1007073 Open in IMG/M
Source Dataset NamePlant litter microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-L136-409B-6
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3038
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Oscillatoriales(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter → Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.3Long. (o)-89.38Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F042710Metagenome157N
F083444Metagenome113Y

Sequences

Protein IDFamilyRBSSequence
Ga0247770_10070733F083444GAGGMLNKMSEIFSCEEVALQNAHLLPEYGKKVIYFVTAMQGESKTFLYIGFTINLKRKFKNHHRKVEFEFLNRIGYQINISWIVFPDSIREKEGQAVQMCYIRAFEPKLNDDQNSFATVQAEELKKQFENWEQGRYEYLKKQIENWEQSGDDKDTIIKKIWDICKQPFDDKHLILSSCKPQKTAV
Ga0247770_10070734F042710GGAGMAENSGENCERSQNFTASSARDCRYVDVLKARAEELGLDSDCVGDKRKRETWEVLLETHGEDKPVKPQFVAKPNQP
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