Scaffold Ga0247774_1001274

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0247774_1001274

Scaffold Ga0247774_1001274

Overview

Basic Information
Taxon OID	3300022903 Open in IMG/M
Scaffold ID	Ga0247774_1001274 Open in IMG/M
Source Dataset Name	Plant litter microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-L001-104B-6
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	12727
Total Scaffold Genes	14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	11 (78.57%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Oscillatoriales → Oscillatoriaceae → Oscillatoria → Oscillatoria nigro-viridis	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter → Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)

Source Dataset Sampling Location
Location Name	USA: Wisconsin
Coordinates	Lat. (^o)	43.3	Long. (^o)	-89.38	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F012744	Metagenome / Metatranscriptome	277	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0247774_100127412	F012744	GGAG	MSHIDDCPAGRSQHLTRGVFFKNHVAKVYVFDRIKHGTALEILSRASAACRFESPHTAVSEHQWREYFGLPVMSLSAAANYYGLKVSELEPHIRKKTTYAGGLFESGMLVLRGAALESACEMGHTAGIQQGFVLLPPRAVLNLCLYLRPVPAVAATVNAFWDYVVAQKLHESTSADWYYTSSQHVEIECERIEEQRLLECLAEAKERKVYPYIQHFGRQTCFEAWARLFTYEGEFPPPRGSFYVERQDWFDRVSHISLWR

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