NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0255775_1059830

Scaffold Ga0255775_1059830


Overview

Basic Information
Taxon OID3300022907 Open in IMG/M
Scaffold IDGa0255775_1059830 Open in IMG/M
Source Dataset NameCoastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011511BT metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1839
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.972Long. (o)-81.028Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F064622Metagenome128Y
F084834Metagenome112N

Sequences

Protein IDFamilyRBSSequence
Ga0255775_10598301F064622GGGGGMAGFWETYYKMSSPPKYDLTGQDPEALKGMARTALDSATIVGLGGEIEAGIRAPFSDKTFQEIDSEINQQQAAFKENYPAEYTTSSGLGMLPTISVGAPAAITRVVGGKVLPNVAFGTGTGAFGGFLSGFGKGESYEERMQLGKEEIAPMAVGTGVVTAA
Ga0255775_10598303F084834N/AQPKSKVKIKNTKQFKERLKADINFGHIADDTARYLSSGALEDSDLDLRMVNAAIAFDLVNPKDFDSFGELFGAASRALRGDGRTARLVDNKKLLADYDGISEYADVGRVLPPKDPYYSDGSPRPDRPATLSTSLKDMREGKYGPMYLPASEYGSQNYAGALRAATSRPFQSIDEVKDSRGQIFVDERDNPDFRTNPLEDLFSKFHEVKYSLIDDLTNKFKKTEIRTRRSRNEDGEFVVTQEPITRMMGVDTANELLLAIARNDSDIAQTAAVSEGFVSMDDIPALRDAINRVGEVMQTAPTKYFEAKPNYAMSLSDFDTALVPRELTENEEVMRIFKENNLPVATYTDFGPNKDEYREGVMRQMKENLFSVPLVGTVGYGALQGVGDGNGESGS
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