NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247779_1001823

Scaffold Ga0247779_1001823


Overview

Basic Information
Taxon OID3300022908 Open in IMG/M
Scaffold IDGa0247779_1001823 Open in IMG/M
Source Dataset NamePlant litter microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-L221-509R-5
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9909
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Pseudorhodoferax → unclassified Pseudorhodoferax → Pseudorhodoferax sp. Leaf274(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter → Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.3Long. (o)-89.38Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F034241Metagenome / Metatranscriptome175Y
F039453Metagenome / Metatranscriptome163Y

Sequences

Protein IDFamilyRBSSequence
Ga0247779_10018234F039453N/AMPATLTALRADTIRLTHDDVHYEPIASDAALGALLFALDLLGRDAFDVAAMRYADRVALGPALDAGRQYGLILQRHVDRADRAVPRLPAAVKVDDAHAWVHAAAAAVPEAERDRFCWRLARRLGADPWGDGRPAIALANQQFGMFEEGFEEVERRADAQAQAAPEGGTAPVAAPRD
Ga0247779_10018239F034241GGAMSQARPRHYLGALRAALVAAKAENASRAAAYHVLPNGISCKMDWAGWGDPFYNATPRQQALLDVLQDLLDGGETEVPMIALKTALRLEIPESEILRSRDNLGADGESGYFFDDVMHALYLLDAQETEQVFYGLIDRLMQPQCARAGLAAR
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