Scaffold Ga0247768_1000046

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0247768_1000046

Scaffold Ga0247768_1000046

Overview

Basic Information
Taxon OID	3300022910 Open in IMG/M
Scaffold ID	Ga0247768_1000046 Open in IMG/M
Source Dataset Name	Plant litter microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-L016-104C-6
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	57934
Total Scaffold Genes	71 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	53 (74.65%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	3

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter → Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)

Source Dataset Sampling Location
Location Name	USA: Wisconsin
Coordinates	Lat. (^o)	43.3	Long. (^o)	-89.38	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F016854	Metagenome / Metatranscriptome	244	Y
F031439	Metagenome / Metatranscriptome	182	Y
F081191	Metagenome / Metatranscriptome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0247768_100004613	F031439	AGG	MYLIPIALIILLALIAVAWSPIFALIIFVIGFVAFLAWAASNKRADEKLAPPEQPGRQPHNENDTPTGIWGERRPS
Ga0247768_100004641	F016854	GGAG	MAAPNTKTVPKPGEVWLSCPPYLMMARIVEVNTEAEPPVVSYELHDDDGSLLQAVEHATLDRGWWRTFQRLEPRFG
Ga0247768_100004648	F081191	GAGG	VTQRKIRLPVPEEVVAAIVELADDGFCRRGELVQRFPRLGERDLRRAVRRAVSQGLVLERRGPDGAWHVAVSSEGWNLHRSG

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