NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0255767_1013511

Scaffold Ga0255767_1013511


Overview

Basic Information
Taxon OID3300022914 Open in IMG/M
Scaffold IDGa0255767_1013511 Open in IMG/M
Source Dataset NameCoastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071402CT metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5730
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (40.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.972Long. (o)-81.028Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000413Metagenome / Metatranscriptome1169Y
F021539Metagenome / Metatranscriptome218Y

Sequences

Protein IDFamilyRBSSequence
Ga0255767_101351110F021539N/AMNKKLEWCIIILLTVILIGLSACGPNPHPDKQPPHETEQEMNDSITKDMDAMDRERAMGENDGPTNFVGIVDALGCMFAPDDCPLKKRKEEQKMDR
Ga0255767_101351115F000413N/AVKKFYSIKLKQFKENIPPALAETMLLDESKLVKYLWKHKALEFRYPKHKGRLDLYADEKYLMMGKLKYPTMFGNRKRMGFMELYIVHRINQRMMNAK

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