Scaffold Ga0255773_10150765

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0255773_10150765

Scaffold Ga0255773_10150765

Overview

Basic Information
Taxon OID	3300022925 Open in IMG/M
Scaffold ID	Ga0255773_10150765 Open in IMG/M
Source Dataset Name	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011502XT metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1126
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	2

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location Name	USA: Georgia
Coordinates	Lat. (^o)	31.972	Long. (^o)	-81.028	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F059022	Metagenome / Metatranscriptome	134	Y
F088544	Metagenome / Metatranscriptome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0255773_101507651	F059022	N/A	YSNLNIHMESILNNITIKHEGVNYHLEQHLWAWMKDLEVDVNLYSFSHQMEMLSEVRRILKEHFGKTSWTEQEAVKELMTKDML
Ga0255773_101507653	F088544	N/A	MYSYYSHEVNKALDLEDHERVGYLIQDMPYDILVALRKEGILPPRPDSDGLESVDSSRERTMIVEQEWTITYTRAKEVVIDRTGSEYEDVNSAIRLTEEVTFPTEIGDVLICDIKDSTNAYPKETLEDREYDAVEGT

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