NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0255752_10270615

Scaffold Ga0255752_10270615


Overview

Basic Information
Taxon OID3300022929 Open in IMG/M
Scaffold IDGa0255752_10270615 Open in IMG/M
Source Dataset NameCoastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011512CT metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)740
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.972Long. (o)-81.028Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003592Metagenome / Metatranscriptome478Y
F018076Metagenome / Metatranscriptome237N

Sequences

Protein IDFamilyRBSSequence
Ga0255752_102706151F003592GAGGMRFKKYYKDILSLVGAVLLLGTTILINKYDVKQLYREFATLSLKVNTQEKKIEGLEDKVSTLIVQNQRLLKELDKHNETRGSENALLLERLYDLEQKVEILSSKPLVSMTKGKVFNDRFEFTDKQVNRIGQYETKGQVLVAWRDDYLTTKKVNVNTIGEINLKPKIEKLDK
Ga0255752_102706152F018076N/AKPRTSTTILGLFRRETTTTEVRVVVEIKNKKTGKVVSGNGTGTIDREISSTGFQINEELPFDRSELGGALKEAIGNAVQEIL
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