NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0255781_10016331

Scaffold Ga0255781_10016331


Overview

Basic Information
Taxon OID3300022934 Open in IMG/M
Scaffold IDGa0255781_10016331 Open in IMG/M
Source Dataset NameCoastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101413BT metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4875
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (71.43%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.972Long. (o)-81.028Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F065638Metagenome / Metatranscriptome127N

Sequences

Protein IDFamilyRBSSequence
Ga0255781_100163313F065638AGCAGGMAEKTFKDKFFNALEQYQATEEESAAEFKGNDFRWAETKIGDDSPTGAPKIYINHQKFKDNPDTGQNYVQEMLIGEGLHLIKEIDPERAEKLYTAAVNDPEVLNWLKQSYRYEQDRGEKRPFEQWTKHSRLDQIIGGYLLGGKNSSVPTMQAWPTERLPYGTKFKAEVEKLKQDLGLK
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