NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0233354_112458

Scaffold Ga0233354_112458


Overview

Basic Information
Taxon OID3300023021 Open in IMG/M
Scaffold IDGa0233354_112458 Open in IMG/M
Source Dataset NameSoil microbial communities from Shasta-Trinity National Forest, California, United States - GEON-Q76
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)542
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Soil And Plant Litter Microbial Communities From Temperate Forests In California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)40.2197Long. (o)-122.985Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F060318Metagenome133Y

Sequences

Protein IDFamilyRBSSequence
Ga0233354_1124582F060318N/ALLRIAAYLSQPQQFMAVADARAEMRRTLEMTAKGSVVLTTHGEPEAAVVPFTTLEDMRSALMQLLVTEIEGSFTRTQEQARLDADAAPTTSDEELESLVGDAIRTARQRGKNSSERKASR

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