NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0224561_1002351

Scaffold Ga0224561_1002351


Overview

Basic Information
Taxon OID3300023030 Open in IMG/M
Scaffold IDGa0224561_1002351 Open in IMG/M
Source Dataset NameSoil microbial communities from Bohemian Forest, Czech Republic ? CSU2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1305
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter → unclassified Candidatus Sulfotelmatobacter → Candidatus Sulfotelmatobacter sp. SbA7(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Source Dataset Sampling Location
Location NameCzech Republic: South Bohemian Region
CoordinatesLat. (o)49.044Long. (o)13.617Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008970Metagenome / Metatranscriptome325Y
F019901Metagenome / Metatranscriptome227Y

Sequences

Protein IDFamilyRBSSequence
Ga0224561_10023512F008970N/AMFSQPTSPEPSEDKKVESAGSSDDHELELLLPEGWNRPLRKRLLDDLRDILSPEKLPPLHLTSRPVDVGMLAGDILSLPWYRTVFTNLGDVISPETLPPLHLESRPVDVGELIGDQMSHMWWTSLLRSLADAAAPERLPALQLTSAPMDDPSLTAGAMQLPRWSSVISTPKVFYPDKPKAVFAPVARVAVPPPKPDPAQVEFVHVLGADLKRDLRRSIFRQRLWISLAVVEVLALIGTSIWWK
Ga0224561_10023513F019901N/ANIAVNHTNPMANIERDSCRFKAIQGADGKFVVRMEMFHKTVSLLADATVDFELLNGSTLDQARKLAESMNDRVTGVLITKP
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