NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0136601_1000043

Scaffold Ga0136601_1000043


Overview

Basic Information
Taxon OID3300023049 Open in IMG/M
Scaffold IDGa0136601_1000043 Open in IMG/M
Source Dataset NameSaline lake microbial communities from Rauer Islands, Antarctica - Metagenome Filla 2 #699
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)61484
Total Scaffold Genes84 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (15.48%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Rauer Islands
CoordinatesLat. (o)-68.5558Long. (o)78.1913Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002045Metagenome / Metatranscriptome599Y
F026883Metagenome / Metatranscriptome196Y
F087244Metagenome / Metatranscriptome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0136601_100004326F002045N/AMDFFCVYCKTRKKFDKFVKVNKIKNKYIVDIKKIVDDEDVDFKKDKTYLKILIFNKIQQAIDKNKDIYYIPDFEKEFSVEKLLNLKKILGDNNFNVLIFYNEFRKNPKIIDNVLSNLSKFSNSQIVRDY
Ga0136601_100004380F087244N/AMPLPHFTQISNVGSPGGPGTLPDEVVYLNLFEVTFILPVILQAQGRDPILLLENATKIDLNAANLTAFDIQSVTQRYKYSTREFLTTPTKTSGEVNIPFQVNVNQEGAMETWNTMKAWYDLVFNSQNGSLHYKSDLIGTIIVNQHDKKGVVLRRVTFQNVQMKKLDGYDLDWSSNDIIKEVTANFAWDYFIDEYIDQNFTINPPLVSGY
Ga0136601_100004382F026883N/AMPLKHILKNKLMLQKHFHLQEYSIDSWPFWMFEENIKIVNEIVEEEEKNQGKQEQQQSSNFDANSMMKNAQSMTNNIPKPKY
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