NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247743_1017244

Scaffold Ga0247743_1017244


Overview

Basic Information
Taxon OID3300023067 Open in IMG/M
Scaffold IDGa0247743_1017244 Open in IMG/M
Source Dataset NameSoil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S221-509R-5
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)919
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil → Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.3Long. (o)-89.38Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011757Metagenome / Metatranscriptome287Y
F066761Metagenome / Metatranscriptome126Y

Sequences

Protein IDFamilyRBSSequence
Ga0247743_10172441F011757GAGGVVSDRFDRFLPLAGVLAGLLFGAAVIVDWNHPRAETGPAQTFAYWQDNRGIHQIVGLLLLPLIAFLLTFFGAGLKRRLEQGSGDAGHGSVAFGGVLLAAAAFALVGMLEAAMTNAAHEGEQQAVYTLNQLHSYDWLAWNAAFAAVLIATGLGA
Ga0247743_10172442F066761N/ANAAHEGEQQAVYTLNQLHSYDWLAWNAAFAAVLIATGLGARRNRMLPSALAWATIVIGASLLTPLGFFGFIILPVWLIVVGLWLFLRMPTPLEPIPS
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