NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0224554_1041478

Scaffold Ga0224554_1041478


Overview

Basic Information
Taxon OID3300023068 Open in IMG/M
Scaffold IDGa0224554_1041478 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Stordalen Mire, Sweden - 717 S2 20-24
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1248
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location NameSweden: Norrbotten County, Stordalen Mire
CoordinatesLat. (o)68.3532Long. (o)19.0474Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003764Metagenome469Y
F038518Metagenome165N
F042119Metagenome158N

Sequences

Protein IDFamilyRBSSequence
Ga0224554_10414781F038518N/AMRSQLATAQSDLEDVNYNLCIVTMHQRASREGKIDANWWDAAMRFGMLDLDEEPAYRVGSYPVKVVRWIRHLIFTLHAERRDVQSAIAELEPKVAALSQIIGDPIK
Ga0224554_10414782F003764GAGMQIQDDSPYVLDENPTALLAGAEIDAAALYRCLKIVRLWCESSALSRSRRDEMIEEVQRLASLYAATLFEIGCAFGIEKVDELKVRIEAACILDPWECPPAEQGLLFSIPSDAAAASPAAARK
Ga0224554_10414783F042119GAGMGTIREVHPARLAWGTFDHEQNDYVNEGDIPASYSGDSIAMGQPMRKPFRMDGEMWVAIGLSDHGAQAYRLCPLRIFNGIPTTYREKTGSAELAETARNDPNGFYDRMIVKHGGQEFVLCGPEVQIVAGQSDDAPTPQVQLALF
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