NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247755_1000005

Scaffold Ga0247755_1000005


Overview

Basic Information
Taxon OID3300023070 Open in IMG/M
Scaffold IDGa0247755_1000005 Open in IMG/M
Source Dataset NamePlant litter microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-L096-311B-4
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)224795
Total Scaffold Genes247 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)169 (68.42%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter → Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.3Long. (o)-89.38Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016854Metagenome / Metatranscriptome244Y
F031439Metagenome / Metatranscriptome182Y
F099672Metagenome / Metatranscriptome103Y

Sequences

Protein IDFamilyRBSSequence
Ga0247755_1000005182F016854GAGMASLHLKILPKPGEVWLSCPPFLMMARIVAVELEGETPVVSYELHDDDGALLQSVEHATLDYGWWRTFQRLEPRFG
Ga0247755_1000005205F031439AGGVPGRQGYPPGMYVIPLVLIVILALIAVAWSPIFALVFFLVGLVAFLAYAGLSRRADEKLAPPEAPGRQPHHENEVPTGAWGERKES
Ga0247755_100000547F099672GGAGGMRLIPRHRHHRRPKGPRIAISEAEISADLHYPAQPRRPRRTADVHRLEIR
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