NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0224520_1032500

Scaffold Ga0224520_1032500


Overview

Basic Information
Taxon OID3300023075 Open in IMG/M
Scaffold IDGa0224520_1032500 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Stordalen Mire, Sweden - C.F.S.T-25
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1240
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location NameSweden: Norrbotten County, Stordalen Mire
CoordinatesLat. (o)68.3533Long. (o)19.0466Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F028027Metagenome / Metatranscriptome193Y
F069504Metagenome124Y

Sequences

Protein IDFamilyRBSSequence
Ga0224520_10325001F069504N/ATTALLGALGADATIESIAARTGHSVKSVRAKIARLDYAVHEVHGFAVFTVNSLADLLRVTPRQIRRWKERGWLETKDRRITEECLGQFLRAHPDRIPFDGLRREDQVFLVDLGFPCQEAATFKKNVREILDGIGRQRKPRRPLRKDNVTAIDLGRSEEGTDGGADLPTTPHSMRQQPLAISQMKAGDPDIRQARYRDNATQSSA
Ga0224520_10325002F028027N/ALDRIRPDVEAAAKNGNGPGARIWQDVSLWAEMNIFIGAKRAGWLDAVRYYSSMSLRFMKAWSHWENIDRRWRAAPPQHFPDYAQWQREVAAVARLSNPDSIAQQVLDSVRGVSEAEWSRLLYGFSDLMAFCLWMELVLDLEGPTSEVVSKELAARYGGFSPALGTVGSKEAVCSLNEWVIEHALAIAGRRPMLAALSFHVNHHPAYHAMRSFALHCHDTWPVEYPDPRPSFEKWREAADAYCEA
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