NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0255778_10030574

Scaffold Ga0255778_10030574


Overview

Basic Information
Taxon OID3300023084 Open in IMG/M
Scaffold IDGa0255778_10030574 Open in IMG/M
Source Dataset NameCoastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071405CT metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3625
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → Mamiellophyceae → Mamiellales → Mamiellaceae → Micromonas → Micromonas pusilla → Micromonas pusilla CCMP1545(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.972Long. (o)-81.028Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018264Metagenome / Metatranscriptome236N
F038407Metagenome / Metatranscriptome166N

Sequences

Protein IDFamilyRBSSequence
Ga0255778_100305742F038407GAGMVPFKRLVVRAPNGQILEDINDFHLFSKVKDVLYKSKCDLESEFATTKSSLAIDQGLWDTEQQTFNEGSGVPVIFKPHSGLLGEEQQFFIPVNQIASSAGYALHIELHLLEPEHFVYSTDATVPSYSITAMTYETELAQLSNELMRDVIGSKQIAIPYKYVRSHHNQLHGQQSYNVRITDSAQNLENTYSIIHKPLAIQTSVSSTNEHSSNYEPTTFYGGRETWEGDDIGGADDDLTKYVFKYGTKFFPNSPVELDGRNKQLALQSAISQLGLRNPMCSQPLYGQNNMGTNWDTRDFVLVNSFKTTGDKVENGINTASTSAPVEIDLTFAQATQNKQLITFVEQANTLYIKNDGISSMVK
Ga0255778_100305743F018264N/AMAIDRHHYKYIYIESSNHKSGNDFKIKVPHGLNHSTRVALQNFSIPNTIGNTYGPLSKLYWVEYMKANATSGEADWSAKLFYIDLTDIPSYTLNAEILDLINEKLQNEVYDFDTKTIGTHQFGTEDPLEITFRYDENTYYFSYSVSQSTLTEDTNIKVFMPLAYKDDAGLWNNFGFYEEKHMNGIYSANYYETPAQTEQVLNTNYKTIYPLASEVPAGVEGYFTYQSFNKIFLYARIAGRPNVGNTLEYRTCIGGAHTTHENHFPQLYICSDTLGTDAMLCKNDTAVPTNILACVLNDQPKFSYLHFQTNTPAWNKLNDTKIQEFDIKIRDHKGRDIPSEYLPNFNMTLIFETIDEIDYHKEHTKEYLREAYRKEHDYRK
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.