NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0224555_1000435

Scaffold Ga0224555_1000435


Overview

Basic Information
Taxon OID3300023088 Open in IMG/M
Scaffold IDGa0224555_1000435 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Stordalen Mire, Sweden - 717 S2 30-34
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)63402
Total Scaffold Genes58 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)54 (93.10%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location NameSweden: Norrbotten County, Stordalen Mire
CoordinatesLat. (o)68.3532Long. (o)19.0474Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003389Metagenome489Y
F003764Metagenome469Y
F003942Metagenome460N
F004301Metagenome / Metatranscriptome444Y
F017951Metagenome / Metatranscriptome237N
F063259Metagenome / Metatranscriptome129Y

Sequences

Protein IDFamilyRBSSequence
Ga0224555_100043511F003764GAGMQIQEDSTYVLDENPAALLAGAEIEAAALHRCLKIVRLWRQSSALSQSRHDEMIEEEQRIANLYAATLLEIGCAFGVETADELKVRIEAACILDSWECPPAEQGFLFPILSESANAASPARARK
Ga0224555_100043512F004301GGAGMTAMQFSLFNAQPQVATVDTQPSVNARNAKRQLDTLRSQLATAQADLEDVDYNLSVVTMHQRASREGKIDANWWEGAMRFGMLDLDEEPAYRLGSYPVKVMRWIRHLIFSLHAERRDVQSGIAELESKVAALSQIVGDAIK
Ga0224555_100043513F017951GGAMAIAHKFETAGLGTAPFRLVRVEMRWFSIPGIPGSKKPGSSCMYCGHPIAECCFLHDANGKEFHVGNECIKKAGDAGLYDTVKKELRRMKSQAEADLAAATFREGRDILARHEIHASLSTQPHPNSYFAAKGKTMADYYEFLLHNSPRGSVANLVSKLRDIATEPMQ
Ga0224555_100043556F063259AGGAGGMHHITLSSLVVFSTICLLYALVVLAILRFCKVAKLKPNPPKSSTVRVEVTISAPAPAGAYPGKSEGPCITTTFVFADELARSVMDFLAGYNSPSRSDLLEFLQQTGGLIAGLSITHQDDNRVRSLTLLGQDAETVLSYLTHCFNCQLAGGTNELQDEHVSLTA
Ga0224555_10004358F003389AGGMQITVWSVAADDDNGTYASVHETELAAYRRLIELTVDSDDKDQVAKAGAFIEAEDFDGLDEWIHEEVIEPLNTYSVDQHKLDVPAASDPAPTVENKPITRRELASLLHGLRLMQEQWEPQMHGCTSIGLHDPLELSEPNSCDHFCDEEDSPLSPTEIDDLCERLNMRLCN
Ga0224555_10004359F003942GGAGMLGRRLNPTIHRYENVELIEVHSEYLECSFLVAKDEWESGKTLLNLFSPLDGNVLGFPHYRLHRDNISAAGPKLPDGTTAQPGMAEAIELQRHAGHALYADHLSAMLYGTGPKPARS
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