NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0224555_1003777

Scaffold Ga0224555_1003777


Overview

Basic Information
Taxon OID3300023088 Open in IMG/M
Scaffold IDGa0224555_1003777 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Stordalen Mire, Sweden - 717 S2 30-34
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)14895
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)16 (84.21%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location NameSweden: Norrbotten County, Stordalen Mire
CoordinatesLat. (o)68.3532Long. (o)19.0474Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000109Metagenome / Metatranscriptome2202Y
F018853Metagenome232N
F063259Metagenome / Metatranscriptome129Y

Sequences

Protein IDFamilyRBSSequence
Ga0224555_100377710F063259N/AMILSSFAVFSAICLLYALAVLVILQFCKVAKLEPNPPTSSTVRIELTVSAPAPVGADPDKSEGTCITRTFVFADEFANAVTDFLAGSHSPSRADLLNFLQQTGGPIAGLFITRQDDTHVRSLTLLGKDAEDVASFLTHCFNCQLAPGADELNNEPVSRTA
Ga0224555_100377715F018853AGGAGMEKERRKVQILTAEQLEVLRTRLAQKGNEPPPQPEKFMMGEIVRAVYPELKKLRENGYSLKVLARVFEENGIVITTNALSTYLSKLGPRREEAQPRTARKGSSVPPPTVEVRRGQFQMKPDVTL
Ga0224555_10037777F000109AGGAGGMTPTKKTRTRTKARIVSPVEKRTQLRLTVDSRFTKTHFNQLFAVLGIRKKNALAEHIIMNFQTKVAQAQLVAFYNNQWLNIPFQNIDTAFVFPLTYEIADELERVGGEVLGGVNRSKTFRVMVAYFASIYKLKSQTQTVPA
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