NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0224555_1014199

Scaffold Ga0224555_1014199


Overview

Basic Information
Taxon OID3300023088 Open in IMG/M
Scaffold IDGa0224555_1014199 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Stordalen Mire, Sweden - 717 S2 30-34
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4430
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (87.50%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location NameSweden: Norrbotten County, Stordalen Mire
CoordinatesLat. (o)68.3532Long. (o)19.0474Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003764Metagenome469Y
F003942Metagenome460N
F004301Metagenome / Metatranscriptome444Y
F017951Metagenome / Metatranscriptome237N
F022571Metagenome213Y

Sequences

Protein IDFamilyRBSSequence
Ga0224555_10141993F017951GAGMTIAHKFETAGLGIAPFRLVRVEMRWFSIPGIPGSKKPGSSCMFCGHPIAECCFLRDANGKEFHVGNECIKKAGDAGLYDTVKKELRRMKNQAEADAAAATFREGRDILARADVRASLSTQPHPNSFFAAKGKTMADYYEFLLHNSPRGTVANTVGKLREFAAESIQ
Ga0224555_10141994F004301GGAGMTAMQFSLFDARPAAATVGMEPSVNARNAKRQLDTMRKQLAMAQADLEDVDYNLSIIAMHQRASREGKIDANWWDAAMRFGMLDPGEEPVYRLGSYPVKVLRWIRHLIFTLNAERRDVLSAIAELEPKVAALSQIIGNAIQ
Ga0224555_10141995F003764GAGMQIQLDSPYANDENPAALLAGAEIEAAGLHRCLKIVRLWSQSNALPRPRREEIIEEEQRLANLYAAILFEIGSAFGLRAADELKVRIEAACILDDWECPPAEQGLLFPIPNDSPTAASPAWARK
Ga0224555_10141997F003942GGAGMLGHRLNPTIHRYEDVELIEVHSEYLECSFMVARDEWETGKKLLNIFSPIDGNVLGFPHYRLHRDNISATGPKLPDGTTAQPGMAEAIEMQRQAGHAIYADHLSAMLYGNGLNPARY
Ga0224555_10141998F022571AGAAGGMQITVWSVAADDDNCTYASVHETESAAYRRLIQLTVDADNKDDVAKAEAFMEAEDFDSLDEWIHEEVIEPLNTYSVDQHKIDVPTIPSSADDGKHITRRELASVLHGLRLMQ
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