NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0224555_1023952

Scaffold Ga0224555_1023952


Overview

Basic Information
Taxon OID3300023088 Open in IMG/M
Scaffold IDGa0224555_1023952 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Stordalen Mire, Sweden - 717 S2 30-34
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2806
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location NameSweden: Norrbotten County, Stordalen Mire
CoordinatesLat. (o)68.3532Long. (o)19.0474Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F033911Metagenome / Metatranscriptome176Y

Sequences

Protein IDFamilyRBSSequence
Ga0224555_10239522F033911AGGAGMGLLRCTSALVLLTIGFADAAYAQTEKTFPTDDEINLVLTQTDRAMQQYKPLIDQEEIQMGKSYTDAAANDRNVVNSLEIAVKAFKRKPQAFNGPLGFAFFEWLDDAGRNAVLCASGAGTQAMTEMMAGNMSKASSLIDLGRSCQDVSTLLYTVSENAGSLYLRYVESEQQLAAHGAEVAGKCADILKNNCVAPKK
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Institute for Fundamental Biomedical Research
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