NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0224555_1028714

Scaffold Ga0224555_1028714


Overview

Basic Information
Taxon OID3300023088 Open in IMG/M
Scaffold IDGa0224555_1028714 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Stordalen Mire, Sweden - 717 S2 30-34
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2410
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location NameSweden: Norrbotten County, Stordalen Mire
CoordinatesLat. (o)68.3532Long. (o)19.0474Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F038954Metagenome164N
F085039Metagenome111N
F093143Metagenome106N

Sequences

Protein IDFamilyRBSSequence
Ga0224555_10287142F085039GAGMSMFEIVPPEPVVVSDKLAEKILQFIGSFMHADCSSMAEALFAAVPELKLVDNALTTMETVYNDCLLTQQGISDLDGKNLAATMDNIQESFQALTGHECRPCDFNMDPGAGREPEDGEDEDEDAQQPAGEDGNQVAHPAED
Ga0224555_10287146F093143GGGGGMSASHATIAAGYISMAEQELEQDLALTMKTVLDREPNIAHRALVFVLQDECLVTFEKADSYIKSHREV
Ga0224555_10287147F038954N/AFIWIVRGLAEAEQRRQLARQAGFTEEEINRIDQKNLAIQTFLAGLIVGPATFIGMIFLTCLLVWVLFPVGLLATLVLWSLYLKWLRSFYRGN
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