NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0224555_1062227

Scaffold Ga0224555_1062227


Overview

Basic Information
Taxon OID3300023088 Open in IMG/M
Scaffold IDGa0224555_1062227 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Stordalen Mire, Sweden - 717 S2 30-34
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1302
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location NameSweden: Norrbotten County, Stordalen Mire
CoordinatesLat. (o)68.3532Long. (o)19.0474Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003764Metagenome469Y
F004301Metagenome / Metatranscriptome444Y
F042119Metagenome158N

Sequences

Protein IDFamilyRBSSequence
Ga0224555_10622271F042119GAGMETIIREVNPARLAWGIFDHAKSDYVNEGDIPASYSGDCIAMGQPVRKPFRMDGEMWVAIGLSNDGARAYRLCPMRIFNGTPTNYHDKSGSAERAEEARNDPNGFYDRMTVKHGGQQFVLCGPEVKIVASQHEDVSVPQVQLALF
Ga0224555_10622272F003764GAGMQIQLDSPYAHDENPAALLAGAEIEAAGLHRCLKIVRLWSQSSALPQSRHDEMIEEEQRLASLYAAILFEIGSAFGLRAAEELKVRIEAACILDDWECPPAEQGLLFPIPNDPTTKASPATARK
Ga0224555_10622273F004301N/APMTAMQFSLFDARSADATVGSEPSVNARNAKRQLDTLRNQLATAQADLEDVDYNLSIVAMHQRASREGKIDANWWDAAMRFGMLDPGEEPVYRLGSYPVKVLRWIRHLIFTLNAERRDVLSAIADLELKLAALSQIIGNAIQ
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