NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0224558_1000003

Scaffold Ga0224558_1000003


Overview

Basic Information
Taxon OID3300023090 Open in IMG/M
Scaffold IDGa0224558_1000003 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Stordalen Mire, Sweden - 717 S3 20-24
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)313914
Total Scaffold Genes326 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)269 (82.52%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location NameSweden: Norrbotten County, Stordalen Mire
CoordinatesLat. (o)68.3532Long. (o)19.0475Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000208Metagenome / Metatranscriptome1593Y
F000795Metagenome / Metatranscriptome887Y
F010268Metagenome / Metatranscriptome306Y
F020407Metagenome / Metatranscriptome224Y

Sequences

Protein IDFamilyRBSSequence
Ga0224558_1000003133F000795N/AMSTQTVELEGFEIELASELYCDRGGDHRELVDRARTDRRRLGHNVDESAVLCVRCMKAIPLKV
Ga0224558_1000003206F000208GAGGLRIRVTTRADLYEKRKQEHIERGYRIEDERPIAVNGLRSFIAVRELTASDPVDELVERALNRMAQ
Ga0224558_1000003236F020407AGGAGGMVKQRFLTHFKPWLFAVTRVVGLIVGYQLFDKTRTYFQYAPLNSVDVVAAATVALLAIGLLCGLWAWGEWCWFKLRRLRRFCSKLKQAFNNRRRPRTVRTSRSVAGTMV
Ga0224558_1000003237F010268GGAGMATMIASSPDAKTNQIGSRPVGMGGRRTRPAAEEEIVAGARFFLPKSGTNGHAPELGRELPNEGEARVEALKSGVTYYSVQEWRPVADFAGRNPELKREAVPRKGTTTLQAG
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