NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0224558_1000020

Scaffold Ga0224558_1000020


Overview

Basic Information
Taxon OID3300023090 Open in IMG/M
Scaffold IDGa0224558_1000020 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Stordalen Mire, Sweden - 717 S3 20-24
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)216960
Total Scaffold Genes182 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)114 (62.64%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location NameSweden: Norrbotten County, Stordalen Mire
CoordinatesLat. (o)68.3532Long. (o)19.0475Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006434Metagenome / Metatranscriptome373Y
F042939Metagenome / Metatranscriptome157Y
F062076Metagenome / Metatranscriptome131Y

Sequences

Protein IDFamilyRBSSequence
Ga0224558_1000020102F042939N/AMRLMSHAVRVDAVKLSAVRVNAVKVAFQSIRVSRPEPAERSQPRIQLLKWFRFQPVETALCVHLRFHKTGLTQHAQMLRHSRLRHTKPLLDLAHRLFRRA
Ga0224558_1000020179F006434N/AMFFMLAVAGANCAADETTAQLKARVEKARPEDRPELCIRIAQQELHVADNLYVEGHVDEARAAVNEIVAYFEEARDAAVQTKTHLKNVEIAARKVSVKLSDIKRTLAFDDQAPVEQAVRRLEDVRTVLLKEMFSDKRKGGR
Ga0224558_100002027F062076GAGMKDEPIFIAGRDRERDFFVGAGLALIPAVSFLPTVTYLIVFPRVAQGRLMGCAIVCFCALLGGIGLWKLALGAADRPWGIFNILNIAALLVLLVIAAYTGVFLALLTLRL
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