NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0224558_1000028

Scaffold Ga0224558_1000028


Overview

Basic Information
Taxon OID3300023090 Open in IMG/M
Scaffold IDGa0224558_1000028 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Stordalen Mire, Sweden - 717 S3 20-24
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)182421
Total Scaffold Genes196 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)171 (87.24%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location NameSweden: Norrbotten County, Stordalen Mire
CoordinatesLat. (o)68.3532Long. (o)19.0475Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007635Metagenome / Metatranscriptome347Y
F093121Metagenome106N
F098527Metagenome103N

Sequences

Protein IDFamilyRBSSequence
Ga0224558_100002823F098527AGGAGMSRYSLNPIKEGSKVDVGYDPLLDSYFLQVRIPDTRGELHLKQWRGNGLGGLESDGVVSIPEIILEEAAAYAVVPAGLLEALLEDRNHEPELVGSEPVIYAGTPNKEIWRHRPGVDPPEGILLAIRPSRVFGRDRQLAMVLLRDFLGEENRARRLARNFAALVVRNLPGNRPWLLTERDLQEAVRDIETTLGLNWIAGAKCYAGEGLSVTPEVQLRRSGRTRKRPTTTSAATQPPVPVRI
Ga0224558_10000284F007635AGGAGMAKKTVEFDAHKTMKQPTKVAFNTKAGEKVRFVAEKPAKVPVHVKFTTKKPVK
Ga0224558_100002863F093121GAGGMRHAVNPCNRDYGGLLYGWQDIAVQNTMANWVWWGSVIAVLCLLAALGYIWWYTELWEVRQECFVLAAAVLIGQRNTAYQSARLAINKHNALVERNDRLFVELNEAKRTQQAAEAIDDGRDSAQPLFPAGAGDAAPIIELDAPVVEAPDGTPRREPIVKVNGSNYVREEDHLRRVLAFETKLRNQRATIQQLKDRLSQFEGTL
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