Basic Information | |
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Taxon OID | 3300023090 Open in IMG/M |
Scaffold ID | Ga0224558_1000081 Open in IMG/M |
Source Dataset Name | Peat soil microbial communities from Stordalen Mire, Sweden - 717 S3 20-24 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 106495 |
Total Scaffold Genes | 95 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 78 (82.11%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (100.00%) |
Associated Families | 5 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae | (Source: IMG/M) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden |
Source Dataset Sampling Location | ||||||||
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Location Name | Sweden: Norrbotten County, Stordalen Mire | |||||||
Coordinates | Lat. (o) | 68.3532 | Long. (o) | 19.0475 | Alt. (m) | Depth (m) | 0 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F013438 | Metagenome / Metatranscriptome | 271 | Y |
F016551 | Metagenome / Metatranscriptome | 246 | Y |
F027769 | Metagenome | 193 | Y |
F039020 | Metagenome / Metatranscriptome | 164 | Y |
F094233 | Metagenome | 106 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0224558_100008115 | F016551 | AGAAGG | MSIEEVSAERFAQLFHHYHQALGNDSGNAAHLRTCDAWANVPPSEKNRMIAATRLALLEVEVIPSERESRRYFAKPGEAEWGC |
Ga0224558_100008146 | F094233 | GAG | MKRTLLLTVMLCSLAALLSAENRNHQQGTIVRMRMTDCIAPQHAFMSAMSGVQATMAESCPEYVLVTDSVVYVIIGKSSNQLIPLAESTPFHFQNNEVLIRVDDARKESRFHVKEMLLRPEWERNQRILDAADSAAMQRHVNGALLVDADARQ |
Ga0224558_100008174 | F039020 | AGAAGG | MTGISGCAAARATDSLLRSLGGTEVVMLFAAAGMPGDAVAELGLVDPGVEQAAIAPVVVRELTTESNGPRRRIELLAGRSAMAPQVSQRNVASADVLFETALGIVYQGDMFHIEGFVVERFGGVAYLYRVLAVA |
Ga0224558_100008181 | F027769 | GGAG | MGAATLIGLVVTLLQSILASAQVGGMSPEIIAEIEAAVAKLLAVQGTPVTYAQLEGLRVTTKW |
Ga0224558_100008188 | F013438 | GAGG | MHRLYQWLTQRASSFRSDTSDGGTSRTVRTEVTVERQGMTLLVGGVAAGFDNCPLCGQKLAPAQAEQARLRLQQDSTAQTDLPVDGTSP |
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