NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0224558_1000124

Scaffold Ga0224558_1000124


Overview

Basic Information
Taxon OID3300023090 Open in IMG/M
Scaffold IDGa0224558_1000124 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Stordalen Mire, Sweden - 717 S3 20-24
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)86831
Total Scaffold Genes84 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)75 (89.29%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location NameSweden: Norrbotten County, Stordalen Mire
CoordinatesLat. (o)68.3532Long. (o)19.0475Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001558Metagenome / Metatranscriptome671Y
F003233Metagenome / Metatranscriptome499Y
F089724Metagenome / Metatranscriptome108Y

Sequences

Protein IDFamilyRBSSequence
Ga0224558_100012471F003233GAGGMKLRTLLFALAILGTVLHSAAAQAKNKTAQVDAPPPELVLSGTSMQSNEALTDVIARKPEIPLGPQDILKAYEIAMSMVADKTSADFSVIVQAQQTNQITREQAEYFLLQSYQMAMMQYQVLSALHDVLKHDIDEAAGQQARQSLKTTSADTVLVVPFTGSVSAYR
Ga0224558_100012480F089724GGAGGMKWPDILDRPSHRYATVEDVRRIFADYHDALHWLAGFLIGDKLAPACIIDACNVAERQGPVFHEWLAHWAARATLRCALQMQGADIAKLAPTYERFERVDEKRSPLSPEDLQLLIEESDVLPARLDVLCRFVLVMHGIAKESSGEVAAHLGISQSAVERAYCVAFDTLHLKSKRMLCNADIPVVLSQ
Ga0224558_100012481F001558GAGGMLRVQTQELDGTLTCRLEGRFTGRGAEEVRTLITCCDSKLELVVDLTDVMFIDAIGEEVLLFVKRLGAEFVAENSYSRDVCERLQLPFIGKRKSNMQVPGNSDGNGHRPRRR
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