NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0224558_1000585

Scaffold Ga0224558_1000585


Overview

Basic Information
Taxon OID3300023090 Open in IMG/M
Scaffold IDGa0224558_1000585 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Stordalen Mire, Sweden - 717 S3 20-24
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)42453
Total Scaffold Genes42 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)35 (83.33%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location NameSweden: Norrbotten County, Stordalen Mire
CoordinatesLat. (o)68.3532Long. (o)19.0475Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001591Metagenome / Metatranscriptome667Y
F041053Metagenome / Metatranscriptome160Y
F064319Metagenome / Metatranscriptome128N
F084476Metagenome / Metatranscriptome112Y
F089726Metagenome / Metatranscriptome108Y

Sequences

Protein IDFamilyRBSSequence
Ga0224558_10005851F089726GAGMSAEQIDVLCNHCGQAFSTFLHEMADHNAKVTCPSCGKVHDDKPPKTAQPDVRAASIKKTSKPI
Ga0224558_100058524F064319GGAGGMRNAVVVLLLALVAGIVQAQEVNIGPSQASIAGRMASKTKTTLEPLDVITTIRCERSLMLCREEVSMLWVTDEGSFEVKHDSRIWDVQVWSTDTGSIQASRDGNTLQFSKEENLIVHHHHKDGIDTVHEFTIVTMDKWIAQK
Ga0224558_100058527F084476N/AMRKTVTILCLFFSLYAVGKDKEPATSQIPSGARIVIAPMNGFETYFAAAIREKKVPITLTLDRDSAQFFVVSTETEWRGFVAGSGASANWNQDGGHYESASAASSTRGLESSIMLIDARTKDVVWAYEVHKSSHGALLFGTHAARGQQSLAEACAKHLKEYIEKGK
Ga0224558_10005853F001591GGAGMTRPFAEIVRVRNVSNHGAVLIGFRSKVQTGEVLDVQHGASRVQFRIVWMSPSGEAGIEALAFESPIFDIGFGIGLPKVFEMVGTG
Ga0224558_100058534F041053GAGGMSSRELGPEWVLSEFLANAEAWDQDDIGELAIVARRLWPRVQAHARKELTNKTSDDTMVLATGVWESVLLSVAKTVRRSNGKGRPILNLEAYLFGAFHHRFNRALRQERRRREMVEYLPLGRDLERLRHAHDLKSVADLDRSIQVKQAIENMDDWTRTVWMARQSGYSWREIAEYLRLTEPQAKLRFRYALGRLRARFGSAA
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