Basic Information | |
---|---|
Taxon OID | 3300023090 Open in IMG/M |
Scaffold ID | Ga0224558_1001024 Open in IMG/M |
Source Dataset Name | Peat soil microbial communities from Stordalen Mire, Sweden - 717 S3 20-24 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 31032 |
Total Scaffold Genes | 40 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 31 (77.50%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
Associated Families | 4 |
Taxonomy | |
---|---|
All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
Source Dataset Ecosystem |
---|
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | Sweden: Norrbotten County, Stordalen Mire | |||||||
Coordinates | Lat. (o) | 68.3532 | Long. (o) | 19.0475 | Alt. (m) | Depth (m) | 0 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F000780 | Metagenome / Metatranscriptome | 895 | Y |
F001734 | Metagenome / Metatranscriptome | 644 | Y |
F003010 | Metagenome / Metatranscriptome | 513 | Y |
F021136 | Metagenome / Metatranscriptome | 220 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0224558_100102427 | F001734 | AGGTGG | MRPSATEIMRSRLPSLRRLALCLIVFVPLLAALLPLAASAQDDAPSLGDLARNLRKNKTQQQPQQQPDAARTVIDNDNLAQVMEDAKKARPVKQDKTVFSIDPSSSALKISSPDVTCSLSFNARASSLLVKPVLIEDLPLTELLKLDGPASIQDENLQLAVFNGTDWDLREITIGLTLERKLGENAKVTARARVIPAAQNNAPVAVERRSDVTLLYHLKATAKPFSTTAFHENIGITPGPDEDWRWSIVEAKGIRPSSAQSAPDSLRDSGPAPHR |
Ga0224558_100102433 | F000780 | N/A | VGRPLLPASTDELVSTAGAREGIIGFLEKTTTEMDSPIENAKGRTTTGAERPYTSGHLMCRTPLWGVAGFLACAYFAWISFSHVTRHEYEWPHDVWTAATYIVWILLLAALALDTRCLRERVFFGLLLINFVAGCGLTLWRNIPSADVRTARIGTGALWALAALVSLTTLRSAPELRGNDAHHR |
Ga0224558_100102439 | F021136 | AGCAG | MISIVVFHVLMALLGLGIWSRAVPEQLVSTMLGYLHSTIGITPPPLEKVRTIALIWIGSTIIIVDGSLLLLTLITKLSYSG |
Ga0224558_10010244 | F003010 | GGAG | MANEAKKKNALLESVPALVLLGLLAGAVGGLGVGLVQLRAMSQAASTAAGR |
⦗Top⦘ |