NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0224558_1001377

Scaffold Ga0224558_1001377


Overview

Basic Information
Taxon OID3300023090 Open in IMG/M
Scaffold IDGa0224558_1001377 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Stordalen Mire, Sweden - 717 S3 20-24
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)25577
Total Scaffold Genes25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)20 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location NameSweden: Norrbotten County, Stordalen Mire
CoordinatesLat. (o)68.3532Long. (o)19.0475Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013877Metagenome / Metatranscriptome267Y
F045254Metagenome / Metatranscriptome153N
F069636Metagenome123Y

Sequences

Protein IDFamilyRBSSequence
Ga0224558_100137713F069636GGAMKNTSDEIGSGGRAQAPIVVRMGVSDFQQKVLEKLARLETKMDMIIGNGHPGRMQLAEDRLGALEKNDLRRTVYDRIVIAGITFAITLAVGVIAAWRNFFGLK
Ga0224558_10013775F045254GGAGGMKVKLWLLALCVLCLILVAVGQKSSPKAEAAASSRYQLVPAQVDSLSGETVQHTVFLLDTQTGKVWKYVASGQPKTLKDKDQTRDLSGGSTIIGLTPGTFVPVDRIEFAPKAGSDK
Ga0224558_10013779F013877GGAGMNFMGRMEGQEIQVELKYCERCGGLWLRPQGADGVYCAGCRVALAAMPNPGEAPPRKARPRRKTRAQGKHLQREDLQRQARIECLQGVAAMEVRA
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.