Basic Information | |
---|---|
Taxon OID | 3300023090 Open in IMG/M |
Scaffold ID | Ga0224558_1003055 Open in IMG/M |
Source Dataset Name | Peat soil microbial communities from Stordalen Mire, Sweden - 717 S3 20-24 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 14491 |
Total Scaffold Genes | 13 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 12 (92.31%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Associated Families | 3 |
Taxonomy | |
---|---|
All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
Source Dataset Ecosystem |
---|
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | Sweden: Norrbotten County, Stordalen Mire | |||||||
Coordinates | Lat. (o) | 68.3532 | Long. (o) | 19.0475 | Alt. (m) | Depth (m) | 0 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F005650 | Metagenome / Metatranscriptome | 394 | Y |
F012307 | Metagenome / Metatranscriptome | 282 | Y |
F020044 | Metagenome / Metatranscriptome | 226 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0224558_100305513 | F012307 | AGGAGG | MKRLLFLLFLVLAIGLVLGGNAFAQNVGDSSVYFSTYYSNANTTGAPDQTIRIINDGEN |
Ga0224558_10030553 | F020044 | AGGTGG | VNQLCWNCYLLSLLRIQHPDCELCNARETGGEEMRKRLEELNWQTQPHSLNNGDHGERVKLFDSKPGEVIPPISVPAQQKKIA |
Ga0224558_10030556 | F005650 | N/A | MPVQNIRDGLLVALVLRYEQDRDQFMILSKQTVDSSFARLAIAELRNEGLVEEQVRGVIRLTALGYKKYKNAPLPYACAG |
⦗Top⦘ |