NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0224558_1008873

Scaffold Ga0224558_1008873


Overview

Basic Information
Taxon OID3300023090 Open in IMG/M
Scaffold IDGa0224558_1008873 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Stordalen Mire, Sweden - 717 S3 20-24
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6423
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (62.50%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → Pedosphaera → Pedosphaera parvula(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location NameSweden: Norrbotten County, Stordalen Mire
CoordinatesLat. (o)68.3532Long. (o)19.0475Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F075039Metagenome119Y
F096506Metagenome104Y

Sequences

Protein IDFamilyRBSSequence
Ga0224558_10088736F075039N/AMNADKQKTLVDSSRRNPFWVCFVLFALLACDYGYRLVNLLDQREQLNQALLMQAQNMGTLKQAQQLEARLEAFSLDLLQVAKTNTAAKQIVQDFNIQWNPGPAASVPAPAASVPAPAAGTKKQ
Ga0224558_10088737F096506AGGGGGVAAVTRCTPPFTRAIHTLDTAEVFPHSQKPMSRVQFIILNLVGGACGLLIVCDLVLGHFNGRLNKTVAATRDQFGQAQQMQNTAQNLVMRVAQAGQSEPALRELLAKHDFKVNLNTNNQTRPSP
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