NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0224558_1028702

Scaffold Ga0224558_1028702


Overview

Basic Information
Taxon OID3300023090 Open in IMG/M
Scaffold IDGa0224558_1028702 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Stordalen Mire, Sweden - 717 S3 20-24
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2598
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium SCN 57-15(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location NameSweden: Norrbotten County, Stordalen Mire
CoordinatesLat. (o)68.3532Long. (o)19.0475Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F063278Metagenome129N
F063304Metagenome129N

Sequences

Protein IDFamilyRBSSequence
Ga0224558_10287021F063278N/AMKERYLIIGFQPPTRRISLDSELAESATDAMRAVAGMRKAADVLLAWTPGQMRQMADLLTAMTPQQIAFNRRSAELEERAFLASETARPTGHDIGPESQPFLVISYSPVTEAVHLDTELSDSPDAALSSVAGIRGLSHVLLAFTPEQLREMAANLEGCTAEQIARNRRASDQEEQTFYAELTTRQ
Ga0224558_10287022F063304GGAMRLNNSTPDKAVSPHIYSLLDQRLAQQGTPLHQLIRTYAAAVPAQPASPEELLNQLAAVLGKWAADPAQRVKPETVLAEEHLRLMDDISKIQGPEGASRLEATLVRVVANQFARNMGSALRIPDESKLICLSDVKPVNAYSAFAQRTALIGIQPHEWVKRWVESQRDTFRNKPSDAGYLRLAQRLSGSWPIEPGKGDAFQRALATFLDGIASSTNHSQAVVVQSSLLDTFARAIRRQARDLGLDRPAAHPPAMSVC
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