NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0224559_1031752

Scaffold Ga0224559_1031752


Overview

Basic Information
Taxon OID3300023091 Open in IMG/M
Scaffold IDGa0224559_1031752 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Stordalen Mire, Sweden - 717 S3 30-34
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2171
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (57.14%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location NameSweden: Norrbotten County, Stordalen Mire
CoordinatesLat. (o)68.3532Long. (o)19.0475Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002261Metagenome / Metatranscriptome577Y
F003186Metagenome / Metatranscriptome502N
F010139Metagenome / Metatranscriptome308Y

Sequences

Protein IDFamilyRBSSequence
Ga0224559_10317522F010139AGGAGMDSVFMRSPEGEVKEVEATTEKLTILMASGWHQVPAPETAQKPVVVAEEEEQHG
Ga0224559_10317523F003186N/AVINPKTILGEWVTALQSCPDLVTAIGGDGDNIRAFMEGLATDNNLRLAILQMQPGSILIAWNGTTPRRLTGGALHFAHRFAIYLRAPEQESTATYADLFWLLVSAKPTGAPSWESLLHLQIDPDCYPMDMDLPSAQRNTVVVSADGATLDYFEVQATLVEQGNPGGE
Ga0224559_10317524F002261GGAMPNWPGIEAFVDGVMLQTFGEPVVYQPVRAGVAQGNPFTVTAIRHLRVREESGAVANFEEISVNPTDFSNPPAKGDWVTAWGTQYVVTTVRQPDAYGMLNLALLQRS
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