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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300023094 Open in IMG/M |
| Scaffold ID | Ga0247741_1000297 Open in IMG/M |
| Source Dataset Name | Plant litter microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-L213-509R-2 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 30296 |
| Total Scaffold Genes | 32 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 14 (43.75%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
| Associated Families | 1 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter → Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts) |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Wisconsin | |||||||
| Coordinates | Lat. (o) | 43.3 | Long. (o) | -89.38 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F065285 | Metagenome | 127 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0247741_100029715 | F065285 | N/A | VQYVPPLVQIYERHCPGFCARLALLYKGWVSHRTFTEIWCARPLALAPVAHPQRYHDLNNLTLVFIPKDVLKSGVDPLLASILAPRVPQIHLETALSCLRYLQSGGHSVKSRKSLKPLLKSRYFTRLKMRPSLSRFRHRRHHNSSGRCLLDEQDLHSMWWGNCRERSCDYIRDKPGVRVPLCFFSYRSKYASNYDLWCTYRYALQLLPIVLANSPPDSRLASSATSQCIFTLFCTAHPRETRKAKKSIAQYLSRCRPIRAIRGRVVVDVMSEIDVD |
| Ga0247741_100029723 | F065285 | N/A | VLESGVHPLLASILAPRVPQTCQETAISCIRYLQSGGHSVKSRKSLKPLLKSRYFTRLKMLPSLSRFRKRRHRHSSGRCLLDEQDLHSMWWDDHPERPYDRIRRKIGVRVPLRFFSYRSEYASNYDLWYTYQCALQLLPLVLANAPPDSHLASIATNCTFNSFCTAYPQETKKAKKSMERYLSRCWPIRAIREMVVVDIMTGMDLE |
| Ga0247741_10002976 | F065285 | AGG | MLALDYKRQGLRRSSTGIWWGNPLVLAPIVHPQRWDLDDPELTKIYMPELGVHPLLASILGPRVPQIHLETALSCLRYLQSGSHSIKSRKSLKPLLKSRYFTRLNMWLSLSRFRKRRHHHSSGCCLLDVQDFHSMWWCDHPRRPNNGFIVRKVSRDYKHCIRVPLHFFSYRSEYASNYDLWFTYRCALQLLPLVLANAPPDSHLASIATNCIFNSFCTAYPQETRRAKKSITQYLSRCRPIRAIRERVVVDGMDGMDA |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |