NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0224557_1173913

Scaffold Ga0224557_1173913


Overview

Basic Information
Taxon OID3300023101 Open in IMG/M
Scaffold IDGa0224557_1173913 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Stordalen Mire, Sweden - 717 S3 10-14
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)772
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location NameSweden: Norrbotten County, Stordalen Mire
CoordinatesLat. (o)68.3532Long. (o)19.0475Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002261Metagenome / Metatranscriptome577Y
F003186Metagenome / Metatranscriptome502N

Sequences

Protein IDFamilyRBSSequence
Ga0224557_11739131F002261N/AGREMGNWPTIEALVDLVMLQTFGEPVVYQPVQAGAAQGDPFTVTAIRHLRPREESGAMANFEEISVNPSDFSNPPAKGDWVTAWGTQYVVTTLRQPDAYGMLNLALLQRAS
Ga0224557_11739132F003186N/AMPTACSTWHCFSARVDASVINPNTILGEWVTALQSCPDLVTAVVGDGNNIRAFMEGLATDNNLRLAILQMPPGSILVAWNGTTPRRLTGGALHFAHRFSIYLRAPEQNSTATYADLFWLLVSAIPTGAPSWSSLLHFQIDPNCYPMDMDLPSAQRNTVVVS
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