Basic Information | |
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Taxon OID | 3300023109 Open in IMG/M |
Scaffold ID | Ga0233432_10000566 Open in IMG/M |
Source Dataset Name | Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_122_August2016_10_MG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Restricted |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).
Scaffold Components | |
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Scaffold Length (bps) | 35755 |
Total Scaffold Genes | 82 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 33 (40.24%) |
Novel Protein Genes | 7 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (28.57%) |
Associated Families | 7 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Inlet → Unclassified → Seawater → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations |
Source Dataset Sampling Location | ||||||||
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Location Name | Canada: British Columbia | |||||||
Coordinates | Lat. (o) | 48.5847 | Long. (o) | -123.5008 | Alt. (m) | Depth (m) | 10 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F005287 | Metagenome / Metatranscriptome | 406 | Y |
F007770 | Metagenome | 345 | Y |
F024089 | Metagenome / Metatranscriptome | 207 | Y |
F039679 | Metagenome | 163 | Y |
F044418 | Metagenome / Metatranscriptome | 154 | N |
F048843 | Metagenome / Metatranscriptome | 147 | Y |
F086827 | Metagenome / Metatranscriptome | 110 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0233432_100005661 | F044418 | N/A | MSIEERMRDYAQKWYKENDLETEKKNGNDLYLRVNDNVFTEVSHCDIRQKAILWLES |
Ga0233432_1000056637 | F048843 | N/A | MKTQKKKDKYFVFSIPVAMIYEIQAETEDEAREILVEEGGINIFGDLSEMTHEDYSKADLEQTYEM |
Ga0233432_1000056652 | F039679 | GGA | MSAKNSHLTIRSDLLEEDADISVPVRFLDYQEDDYVGDSATLDIDCEYCTDGEQLDNVAGYNIIVKITDPSKKDKYGNAWKDRLAFAISSDYDWN |
Ga0233432_1000056654 | F007770 | N/A | MSGEGLSVSFRRTQDTTKSNSELLEEFQGLVYSNKKIMSHMKWYGKLYSVEIEEHGDEDLQKWQQEGVAIKDTFRFCISVYESWGEDSNHYECHQTEGSFVSVARQFAKDHALMYFPDGFPAEWIETETIDGEKCWNHFNVKPDDKNIDKICDIWYRYGIMKLQAFDEEVESQLWAEARDKIKQLMEYEYAR |
Ga0233432_1000056655 | F086827 | AGGA | MQACLELEKKYKDILLKKFLSHVNLVELQHDAKTEGDNTDYWNSLKLDDGNFVDFNFHMMSEWDDVDRSWTCEVYSVDPPTEDNKYHSINTDHTLFLAFYHPESKELEIA |
Ga0233432_1000056656 | F024089 | N/A | MNKLEQAIANMSNIHEDIDTLMYAIGDAPRQYTEDELLNMLIGMSQLHQTLYDKLWVEYQNFKQEHRVSDEDDIFDQNHLDNQKKRN |
Ga0233432_1000056678 | F005287 | N/A | MQINSDQIIYSEHGYDECFEYINSSGRVPEGIAVGYVLISKVLKQETFFLFNDIKYSEYDHDYWDNYELEHDIDRVILP |
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