NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0233432_10017815

Scaffold Ga0233432_10017815


Overview

Basic Information
Taxon OID3300023109 Open in IMG/M
Scaffold IDGa0233432_10017815 Open in IMG/M
Source Dataset NameSeawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_122_August2016_10_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyRestricted
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).


Scaffold Components
Scaffold Length (bps)5285
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (18.75%)
Novel Protein Genes8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (25.00%)
Associated Families8

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Inlet → Unclassified → Seawater → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations

Source Dataset Sampling Location
Location NameCanada: British Columbia
CoordinatesLat. (o)48.5847Long. (o)-123.5008Alt. (m)Depth (m)10
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016739Metagenome / Metatranscriptome245Y
F044160Metagenome155N
F057691Metagenome136N
F062260Metagenome131N
F071134Metagenome122Y
F089162Metagenome109N
F096053Metagenome105N
F096079Metagenome105Y

Sequences

Protein IDFamilyRBSSequence
Ga0233432_100178151F057691AGGAGMTPAIREAQDRLSDAKRQLLNAQNDFKVNRGSDTFRYRVQAMLMVVNRIDKEIGNRIAWEKWGTGPWPEDGNKV
Ga0233432_1001781514F016739N/AMRLNGGLLSEGTSEWVRLRRAWKKWNASCHPDDRIDWNEFLEEHS
Ga0233432_1001781515F044160N/AMVKFWTLMSGTSYIASISNPSYTRNPLCAVAYDSIKKADIAANRWKRKYGLPVMVHVILEHDVERYQSKDDYEDQAHSAFYGENL
Ga0233432_100178152F062260N/AMKKLRQHEDLIKEFFDKADELSHLAATIAILTDEQDFMAMDVLTRMLITSMCNGDLEALTKVMADFAVKNSNNGKQDAIDDLIDATQNERGVN
Ga0233432_100178155F096079AGGMYESVKFIKLTRAGGYGEIVVNLHHIVKMKARYKNGKGAIIWLAQDGSVSGYDMIEVLEDLDKIIQYLSVKNNS
Ga0233432_100178156F096053N/AMAIGKKNSGFFKQDAVMGKLSADARKPYKVNAVVAQALEQGKRNKAYLEERAKNHVPRFV
Ga0233432_100178158F089162N/AMETTNQIEKALEKKVNAEIEEIVEQFTNACRALASKYGCHAFQDLKHRDDNITTLSPEEFKNIIFNSLQKKYGPSMLKKKSEELIAKLDLI
Ga0233432_100178159F071134N/AMNNLVITSTRTFNEDSCIRVKGKVEIDNVKHKFEVETDEGGLIRVGGVDTQLLSQLVEAILEVDPDLDCFLE
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