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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300023109 Open in IMG/M |
| Scaffold ID | Ga0233432_10034214 Open in IMG/M |
| Source Dataset Name | Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_122_August2016_10_MG |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Restricted |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 3426 |
| Total Scaffold Genes | 8 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (25.00%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (25.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → unclassified viruses → Virus NIOZ-UU157 | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Inlet → Unclassified → Seawater → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Canada: British Columbia | |||||||
| Coordinates | Lat. (o) | 48.5847 | Long. (o) | -123.5008 | Alt. (m) | Depth (m) | 10 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F008425 | Metagenome / Metatranscriptome | 333 | Y |
| F024797 | Metagenome / Metatranscriptome | 204 | Y |
| F040126 | Metagenome / Metatranscriptome | 162 | N |
| F049672 | Metagenome / Metatranscriptome | 146 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0233432_100342142 | F049672 | N/A | MIPKFKNYLTEASDYEFNPNEAATRLKDREKENIQRYRAAQDRGDNYAIELYQLKIQMDKIDLEGLKVQTAIHKLKQKNGK |
| Ga0233432_100342143 | F040126 | N/A | MKRLPVFEDFVPMGFGANNASSFSLGSSGRPETGYNMDAIVGPVQTLGNHVAEQANSYESNDNTDHTAEAYIKEAKKHINDKIDEACETYSAMDESTINEGTDIGMWNQGGLKGNENVQVTTFVGPKDIEDFGLGRKCMQINVGRSYVALNPADIVELKELLKNYKV |
| Ga0233432_100342144 | F024797 | N/A | MSEFLRTSTGRKLLEKDIPKLTSVLERIADQLEKSNKLEEKKFVLEERLQKLALKESTNKAPTGKPNNLLGL |
| Ga0233432_100342145 | F008425 | AGGA | MPDKDITYKQFIAHMNKGNRVYMKKPRSWQKVWFWWESKKEKWFLNKAFDKREDGRVEPEPSVWITANQMEGHMDHMLRQGYKYHINE |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |