Scaffold Ga0255760_10160105

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0255760_10160105

Scaffold Ga0255760_10160105

Overview

Basic Information
Taxon OID	3300023115 Open in IMG/M
Scaffold ID	Ga0255760_10160105 Open in IMG/M
Source Dataset Name	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071410BT metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1255
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location Name	USA: Georgia
Coordinates	Lat. (^o)	31.972	Long. (^o)	-81.028	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F028484	Metagenome / Metatranscriptome	191	Y
F037687	Metagenome / Metatranscriptome	167	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0255760_101601052	F028484	GGAGG	VSRKDGQPQIRKLGNDYYINMSDLIEMLNAFGEFSLDEFLAKAEEDLDEFDCGWFEGDQARLEHLLNLFSMLIAEKRLDKIDNVESLLREFPSEKFIRNRGQ
Ga0255760_101601053	F037687	GGA	MKFTYDKVKNDIWEVIKDKTDFVYEPSSECDVCIAHSDWEYDPDEFGDEPPLCQNHYEQDACRYFYADNEYGSSNYDTPACVVGNWFVFEKFSPEDLNVSTWDELEGQGVKTIVEKANLEVSDEAKEFLNYLQTYQDTGVSWGNAYEMAVEKLEGNGE

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