NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0255751_10493475

Scaffold Ga0255751_10493475


Overview

Basic Information
Taxon OID3300023116 Open in IMG/M
Scaffold IDGa0255751_10493475 Open in IMG/M
Source Dataset NameCoastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071412BT metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)580
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.972Long. (o)-81.028Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003976Metagenome / Metatranscriptome459Y
F010571Metagenome302Y
F051564Metagenome144Y

Sequences

Protein IDFamilyRBSSequence
Ga0255751_104934751F010571GGAGGMSMNTRQAIYIENLYEDFYEKHYKELSKTSDDVEWIENEASRLAEIDLDNFEMEG
Ga0255751_104934752F051564GGAGGMSIPKQMLKEWCETYEEAIETLDYLANRSVGTAKEEIREGLEDFFIDNGLMSEEEFKQEVDNE
Ga0255751_104934753F003976AGGAGGMSRLYNDYYFEKQDILDTLEKLDMSVRLLNVWVNEPMGFENAKYLLEKNANQKFNWFS
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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