Scaffold Ga0214921

Basic Information
Taxon OID	3300023174 Open in IMG/M
Scaffold ID	Ga0214921_10000002 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300023174 Open in IMG/M

Scaffold ID

Ga0214921_10000002 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	539928
Total Scaffold Genes	574 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	198 (34.49%)
Novel Protein Genes	10 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (60.00%)
Associated Families	10

Scaffold Components

Scaffold Length (bps)

539928

Total Scaffold Genes

574 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

198 (34.49%)

Novel Protein Genes

10 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (60.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location Name	USA: Georgia
Coordinates	Lat. (^o)	34.2611	Long. (^o)	-83.95	Alt. (m)	Depth (m)	2
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Georgia

Coordinates

Lat. (^o)

34.2611

Long. (^o)

-83.95

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F055390	Metagenome	138	Y
F060563	Metagenome	132	N
F066475	Metagenome	126	Y
F078162	Metagenome	116	N
F086536	Metagenome	110	N
F091246	Metagenome	107	N
F093170	Metagenome	106	N
F098564	Metagenome	103	N
F100277	Metagenome	102	N
F104369	Metagenome	100	N

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0214921_10000002128	F060563	AGTAG	MPIFCEPLAAETLRALNQAVNDLPPEHHLRKDSDAGIVSIVYDAHKDVTVFHGKSGFYFRRGPVVDAIKSDINNGRGLICTAYELADVAATASVLASFEEKFGVKNSKKIDIYTTEFNNRRFLLAKFPANVIKQLFETQGGTMKTGFKGPRDNLLKIPTLDKYFEFKETTEPTVASVFATQYEKGNYDYVKSVHYQLLQEVVSHPNLGITLSPVAEWTS
Ga0214921_10000002230	F093170	N/A	MEVGYKVFPRGKRYAYVMMEGKPVFLRNIVFIHNAENPAQIVIVHEWGMSDHRWEPPKGQFEWDELGVSRKGVKLPYKQILSAMRQGVLRETKEEAKIMPSELINLTPLDTAYAQDWVESGIPNAMFMYQFWRATITPATMLEAQKRTQELVDNKDWRHLLPPDVLEKDDIRWWSPREPNAYKHIRGGFSQKMTEIYFKLVNKSRK
Ga0214921_10000002284	F104369	N/A	MSVTTLSIKDIPYPLVPNTAFHPINTKAAIERIRSDYLDKIESVNPHQPVTMELILMTILESPRAHATWATVFEYRGTPFYVVRNLAHTNTTLPYRRVLVVKLDPLVRQDAFIIPYPVRTWDRVHSSLTHEEFYPLPSMTMLQ
Ga0214921_10000002303	F055390	AGAAG	MSTLSFAPVMPNPSGPACFTSTDPHYSETGAPARMADGRLVTDYRPRCYQYPLLAAQTWGDNDARARMVHGADELMRAAREMNDRKNTPTSCDDTMVPELYKRVCTWEGCKTIPGNFQGIGTGRIYVPSSAGNASFPQALSDADVPKIPKTWARQPPRLPSQCAADDPEKQWLYKGDVVNMGGGAKSHPYSAPRA
Ga0214921_10000002396	F091246	AGG	MSAVNNQVMKCPVIDPNSTQTNDFLLQKWTSPSGSKGVMSDTLPVDQNTGLITSSAIVGQVQTLMNNGTIPMEKPDEKGNYDMDALMVSDGKLYSDLQSEFCWYQSRYLYALNQFLQAATLRQATDAGPANAFLATTQTLNKRANSVLQIISYLAQTRVSNIMTSKTNIDNLNTNINKKLAELQAGYSLLNKDDALLTTQKEMVRYTEEKNNYTNNRIAVWTALNVLALAAIFYVYQKA
Ga0214921_10000002455	F100277	AGAAGG	MPSLKKSSSIPRKLGVKGEDTILKDAIDFLFQIKGIQYIQKHPDFIVPTAEEFFSHVSNLATEGLSSSPKKRTCLSNRFISFLCFLTPMFHDVHMCSSILSSLTIAVYALTLYTTTSTYLREAPPSAPLNKALQVIDIGNTVSSIHPSLQHFISIYMPYVPKQAIEKLVAVTEEFMRRTLTKLPTHVKSHLPALDIQEIGKDICQGLDAIYNYSHFFLQWKAPVAVLLTRCGMEPCRSMCEEIADFVRSKSHEQTV
Ga0214921_10000002462	F086536	AGG	MATAAANKDLVEAVRHYVHFDNLAEALNKQVTNARNMRGQYETKILTNLETTGMKNAVLQINGATLQRASRVQANSLSWGFLEEQLHAYYASHPVRSGDETTAILDFLQNRRGSKTTEYLKKTVGGGSGASGADAGSKKPPT
Ga0214921_10000002487	F098564	AGCAG	LLENPGVQGLKYELWQGSTLYLITPIIGKASEVARTTDAILQWLGAAPGFKIYIWFRDDPREIRANQWPTKAQVNGGWTTVGTPNIVIYRSEEWERVLIHEMIHAMKWDWDVGPTPAPCWKMNKTDKLNPHLFEAWTELYAEWLACAWYGKSWDNQRKWQDLQATQLLARATHKWEENTSVFAYYVLKAALAPHFEFLWVFGQGKTPEEKQYVMCGLVTPELERLRALAKTTVPQDMSMRMSVPDVLEGFKR
Ga0214921_10000002489	F066475	N/A	MSTASPRDRYTEATNDLAEHIGDKVLLLLKSPENQARIQSVLDPIISHIINRIFPYILLSAILFLILFILTIGTFYMVMRTSATMTYSTKISD
Ga0214921_10000002490	F078162	N/A	MFGVPERRADGNNVYFYVPMAKPVSLGVRLRMNSKLAILPEAGKGLQEKFAKLEFTILNELTKTETLFKNKPSYESLQRITPQWGMVYDTDGTPYWNEYTEKEFFFETKEGAYTNSIVDLELIGILITRSTISPKFAVKFVEKDTQSTVIDFDWQAPANPVKEIEEVNDLESAADTNPLTLRSPALIAKEKADAKEKVKVLFRTADEARQLALDAMAKFFGKYEVSDDESQFSDWMTDDDNSTNSEA

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0214921_10000002

Overview

Ecosystem & Geography

Associated Families

Sequences