NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214921_10000008

Scaffold Ga0214921_10000008


Overview

Basic Information
Taxon OID3300023174 Open in IMG/M
Scaffold IDGa0214921_10000008 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)456392
Total Scaffold Genes479 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)137 (28.60%)
Novel Protein Genes22 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)7 (31.82%)
Associated Families22

Taxonomy
All Organisms → cellular organisms → Eukaryota(Source: Euk_MAG)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007255Metagenome / Metatranscriptome354Y
F009382Metagenome / Metatranscriptome318Y
F009453Metagenome / Metatranscriptome317Y
F010014Metagenome309Y
F010748Metagenome / Metatranscriptome299Y
F011564Metagenome289Y
F013277Metagenome272Y
F014361Metagenome / Metatranscriptome263Y
F014946Metagenome258Y
F015306Metagenome255Y
F016120Metagenome / Metatranscriptome249Y
F016250Metagenome / Metatranscriptome248Y
F017603Metagenome / Metatranscriptome239Y
F018866Metagenome232Y
F024038Metagenome207Y
F034079Metagenome175Y
F034484Metagenome / Metatranscriptome174Y
F037077Metagenome168Y
F046855Metagenome / Metatranscriptome150Y
F064425Metagenome128Y
F069739Metagenome / Metatranscriptome123Y
F102616Metagenome / Metatranscriptome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0214921_10000008103F017603N/AMSQVQPPSPFVSDFPFANVEGNLFTPVCLRTHWDPTEMLRHILPQQKVGLPQDFRPWVKVCKNYVTSAPAIPAPMPPKDMVFPTGGEFYPPGRYAAAIDQESILRTLNHPLDKWCPSTKYIPRQSSDMYVAGMTVPDRKPVSDAFVSELSMPQALLRTDIYTCRSENDTKYFDRSPRLFNNPTKQDRYGAAKFYALPGGGPRGDPMPHGGVNEVPPTQQAIRAAWPIEQPGGPLPDYKKGDPTERPIRGFGSTRAPGTQAPNQQNLGPKPPGTGYTSFVGTTTSGLAAPVW
Ga0214921_10000008143F102616GAGMSIEYKVPRLLWENFESVLLAQSKRYIGELAKRLGVPEKELLKKVLPTSDSLKVIIQDTQAESNQCKAYIQHDKLTIYCRKATAYGCEYCSFHRNKRMTVVEGTNPIQLQKVKDTSTLEPLWISKDTLYNSSGELVGKINKENGKVKIFVLGA
Ga0214921_10000008155F016250AGGMSPINRLLLVIAVLFIAAVTYAFYYSSDLLKKNPFLDKNLLKRGMDKPTIWLYYDTSDVNSRQWLDFGARSSRALNMPFLNLCYETIVRQNQEDYRIEVIGGLTGVAELLGGWDQLPPGLRDPISPVNEAELNYIRAAILAKYGGLWLSPYCVSLKGFGKLPENKVVFFGTDLDETYAGPDGTNVPGFRALWSPKPKHPMFEEWAAITYARVAQKRGGDQIRGDAKWDFVRLSTEYVNTGIVVDPAVEGMRKKDGKRIQLEDLLATGTDGNLPFDLCAYTVYVPFPWPELRDREIFGWFLRMSEDQIMGSDIAIKYLLEKGLR
Ga0214921_10000008162F069739N/AMSLDEQIFEPNVIVVGVFGSTNKVSEQDIQDNTLTLILQELGRMPDKVLIPTEGNSSIYIDNWAEALHIKTQTFQADWIRNGKIAQIIRDDRIAKECTHALVFLGQKSTRLEKFAEKLCKKGKTVFTSSHNQTLSQFEMSHCEPSRPSKALTHARKSSKGKEQTLLKFQKKEEC
Ga0214921_10000008215F016120N/AMSNNDNRPPPLDRQSIEEATTEAEARSLEYDPNVRARYIREILRDIAQWMAEGLPEDTIRQKVPDFIEKYPELFKKIINKQDLSPVQSMLAMLDRMGEGNISQHQASVIIGKKLVDRYVTPQLNGADAKK
Ga0214921_10000008249F037077N/AMPTTIYDSSLITQRRRATTESGSFINRISPWNTPPAGTSTNQPNTGYAPALGIWDQSIINTVKNGQMKFYRKGTGGCTTVDNGCPCSPLPASEQGCCGTN
Ga0214921_10000008250F007255GGAMTPTWFPWIFVGGLVFIALSFTAAKYKDKDYKKMNLLQDFISGSILIAFTGVLVPDMFPKMELASLPTSFSGGFSNDDLDLQVGPPRLAGR
Ga0214921_10000008270F014361N/AMSALSAFCMQLINFFEELCNTFPEERDIKMAIEAIKGAKKINPRLILDLFTDHVYNDLAPAILKRDVLHIRQFAQQKLSTQFNEMISALAIFDKHWDSMGTANQEIIWQYLKVLCILSEKARAT
Ga0214921_10000008288F009453N/AMASAGTLLSDLDGKAPVFSNKDDDLVNKILADMNIPSQSNPVMMNNSAPPPASNGRMINSPNPNTTYPMAVDPGTATAHMIGKDYPTAADFANVMHAPQFSHGGSQFAQYAPQAAPQQPTLIETTKGNMYSDIISQIKQPLLVAIIVFIVSLPVINVLIGHYLPSLLRIGGDLTTAGLIVKALVGGFLFWFIQKVLVPLMVV
Ga0214921_10000008301F015306AGGMMSKSVHSTTPHFEKQKIARFRRLDNDHISAIESLFKQFPFLNDRVEIHMPFNRAKSTFSSGTVWLWPKFDKRPVGYLIFIDGFAPCIWYPERQEGMTFRWLLPPNFCQKGATVCLANILAGESILQIEDIIVSEGKDLWSNHIFSERWHTLRDFWNSLPADQPLLAFKPRIVKPIPLNQWHLHYDPAIYWIIQADHSRQARWYWKDTVTIPEHKAVEFIAPVLKRSTEILSILVAYCTPYAKTVLPDTYSLYSQEGVSLGVASISTLNLSLEIRKVISDNPKGIPVEVTWNDSFNKYQVVRIMPDQTPITTASFFYHKNL
Ga0214921_10000008323F009382N/AMAELNQPGFSRDTSPNLYHNPPFGTEYKAARKAYVPPVKDVYPARDSRYPAYAGPMQDARLVTDYRPQCTKNIRAGIQFDTKLWLVNHTDNVIEESRRRQVEWTGASLAMANTVPPPADIVHSNPFYSEVNPTGLLNGIGVERANVPCPALFGTFSFEPTMSEIRNNRKNIGLTTYYEGGRNSPRGAFPYN
Ga0214921_10000008330F046855N/AMSLPAALTSQALTAITAISPLENFLQIFNTNPYFIGLMMLILNLGGRFISLEVTKKQEQFLQLPWVRRVLIFTVLFVATRNIWVAFWATVTVVLFLGYLFNENSALCIFGDGGRSGSKCSDAPKPGEEMTPEEKEILQRLSSKAQRYQTGGSGGKSTSKNPQQQALENSVGPPADEEDDVLHTDIYAANLTLLRNPQ
Ga0214921_10000008337F010014AGTAGGMAQPVFPDKHTISAYDAFPMPQFMTRTRREVDTIDAINARQFEHWQTDGKYGVMNRPDINKQAPFYDMLPNDSRGSDKSYRSQPRFDVDASRGVQNPYFDKYDTTFDARNMTRELRASVYEDKHTGYLKESEKLLQRNFDNRWLNPNVVAQQAQAAEQLRPKMDDIRLFYNNKPSADTSNKLNFNFNC
Ga0214921_10000008339F018866N/AMDSQRHNKTHKKPFNDIENPVGEADNNFKNLLEDSAREAYSRPWHRIERGLRLNRLRIFIEEVGPQFTMTKDEKDAFFIFLQKALDKKLLNTLKVVNYDQEKQRITIIRGLEIKRNQEGILKWGFSTKKPRADGTRKKKKDDIPSVSTHGEESTETKIEDEVNQIINN
Ga0214921_10000008371F010748N/AMTSVLYGAGLNYQTGNPVRQEIVAVRREVDSLRKQVELLTEENLVYRKHLMKLLQASEGGNTEFTRDLMTLAGGDAGGTNREPGGGTVQGAGFRR
Ga0214921_10000008424F014946AGAAGMQPCSYAWRGFRGVGKRTQLLKFLETQADKIGVPFEIKKGTWFLNKQSCAGGDPDEDDDEATGKSIPYEESNLHLGFDVARMSMSDKVFLQSILTRWTGQQDVCLVSSLIQSRYLVLYHAHFLTDESVLQLQECLEQYPTFAILLTTELPLSGRLRDFCFEIPVVGEDNLLANYTKKAKLAENDVWLDFFKKTINDWSDGWGTSKIADVRNWIYICLQRNLRWVDVIMYWVEAIYLTEWITPSMKAKLMEILWNAESGSGWVLVTSYRIPILWEHIHLKLAHQLYKFRSELATRIAKPVPLA
Ga0214921_10000008432F034484N/AMDLSEVPYTLIFNLVLAAVLVGLVVYFMYFTPKYKRVDEGFFGGVARGSGHPDCLRTLPEGSEILDVLLSRVEANPAISEGSADYREFQLILSKLGCLKKDLMSPSGIVEATRYQAFETAHDRINVAEVCAMCLSQTIPARDLDIIFATWRDRGNVLLRKLCTEAQLTEKGVTSLEALYKKAWEDVYDIAKSRCLKTDFSKQNGGSTGGDVGAYEPEDLKDLRAYTNKYGNNLSASGWNGSV
Ga0214921_10000008437F024038N/AMNTPLENIAHNIIYELWFSVAESIFKRVCEVTELNQEQIDALKVVALRPNDFQVLIE
Ga0214921_1000000855F064425AGGMETSTIQIDAFSTNLHGARILCQGPFPNGRYAPIMESIQKLREPFKKKILLTRATFSLSKYLPLQYDAVFQVKDTHDWTLILTYITYAPKPLLVVAEDVPIPDGLWQKLNKTTTFVNITSSYVLNIRPYDAIFFAPIEELATSYTDYVLKLLQSMYKASYSPKEHKEVLQELRVASAGVCWTKYEEDTQGGAIYWYDPVGNNQGDSLSNKQMSELFNWLSQQFNRD
Ga0214921_1000000860F013277N/AMEKYTPPKSAPLPADFDEFYASLSPQERELHQLAIDKLQSSYFVQWTHFYKKWKKAKDAASTTVTK
Ga0214921_1000000885F011564N/AMEIPIPNWVSIKNYRTMTGEKKTRAVNGNKLIQYEWMKEEVNEFYEAIYLENIEEIRDEAIGLIRTFQQFQDSKRVVSLWKKVRKDVLYVFPTRKIFIEAFVKWHKKKIQKNQALGVTPEELIDISKIKWK
Ga0214921_1000000889F034079N/AMTSINQSSGQGALFELVARGVKDTYFLKDSKESFYPYDASYESSAHHLAERKTIVPINGTSWGNTFEVEIDPYGDVMTECAFEIDLPTWLPQLPRVLGGPLYKPSVINGLYPITTKINLESYGYVNYIGYFLFEKIQFYQDQFLIQEWSGDGLLAKQLSEGSYTSSFLQQTLGGLLEPIDPVTNLPTNRGIQLRATPGHLRVKLPLPGLQCPGDGGFPLVAMAWQKFRLKVTLRKLEDLVVCSNESLYRPNITPWLVPEFTYTGENGVQIDFTPNTLAEMGNPTILLSTVQHYVPPRVQEELRSTPIQIPFRRQFENNFTFGELDYIPLDKGGTAAVTRRLDGRHPTEKIFWFFRNQTSIDRNRLDNFSNDYFLPIPPAVIPPTATNPYTLFYGAYFYKMKLVIAGRDRENLHEPFLWQDICQLVKDEKASGLGIGEMKWSTGDNYGTIYPAPRQPEGTVNFTTADRPTLHIDLANITGNEYDGRRRSEFRVFTEGWDVYDVREGRGRLLFAN
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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