NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214921_10000028

Scaffold Ga0214921_10000028


Overview

Basic Information
Taxon OID3300023174 Open in IMG/M
Scaffold IDGa0214921_10000028 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)301993
Total Scaffold Genes371 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)33 (8.89%)
Novel Protein Genes10 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families10

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002045Metagenome / Metatranscriptome599Y
F007365Metagenome / Metatranscriptome352Y
F015094Metagenome257Y
F018370Metagenome / Metatranscriptome235Y
F026554Metagenome / Metatranscriptome197Y
F027850Metagenome / Metatranscriptome193Y
F030433Metagenome / Metatranscriptome185Y
F032658Metagenome / Metatranscriptome179Y
F044482Metagenome / Metatranscriptome154Y
F045605Metagenome / Metatranscriptome152Y

Sequences

Protein IDFamilyRBSSequence
Ga0214921_10000028139F027850N/AMKGFQIYNKKQLFDSIDRISVEKIDQQVITKYAGKVIRVANVSKRYEVFDIAKYLKDKIELIEQNFTISKYQLRITSGTQFLQLVSDSVNIGGINFYKSFYILNSTDKSRRLSFYAGLHSEKFYFIGANNVGLSKKHLTGVNQAAEVASTGLNGETFNQQIEALNNILGHKVPFSKIREAILGDSKEIPQINHRKFDAFKNQIRFAKSDLRLKLTPSQLNQLFIPSENLTAVQSDFYIDAFFVFCEYLRLFNRQDSHIIKNETDRIMKITQWSVRNSVLEALGI
Ga0214921_10000028143F026554N/AMKLDINEVYHNYIVRVIIFSLFTYKRLIRQPEVYKQSVYSFTKKRLPWQINLLIDTGIQMPRDKQREIVLEELLEGVESSDLTTVTVTFTTPLKETTIKVDLRNEDKYQSFLYL
Ga0214921_10000028163F030433N/AMSLFAKAKKNQVEKPKSAKDKKVRLQVADPNFFSKVEKLEQLNDTLKSAKAQADMISDELRDLAKAEWIAEFERTKKNPESVMIVQTVLEDTASFMYVPSDKYISVSEERAEELRETFGEEIVEEETTFSFDSQMIEKYGEVLSMLIENCPDIADADREKIIKATTKYAVAKGTIDKLNQYGDVAEVFESVRPVVSLKNVEVIRG
Ga0214921_10000028278F045605N/AMKITLQNPKKVVLQEEKSKTVSTLTVTRVVDLPKKKIVRAFVEEIEGPITLWEGAAYDAAGQWTDSDVQARLTQLYS
Ga0214921_10000028306F018370N/AMIHILWATIRPEQFKDAHSEWIRRSDAPDNIKTYVAVNWVEHADNLRDYLKNDYIITLNTNKIGVCYPSYQLSSNLGIKMGVVDESDIVIFASDDFLAPQNWDTYLINKFEKMGDVGLMVRDGYQLPDSSNMLHPAITIPIMTWGCLKKLNSVIYHPSYNHMFSDCELYNNLKDLGLLYDDRLNDETVFEHLHYAAGKRNSDEADRAYNQKWKEDEITWNRRKLLPVEERIKI
Ga0214921_10000028327F015094N/AMASKDKMFAIRVSEKLLEEYKQFCDENSMNASKRLRRFMEQDIEIWKKKKIQKDSGTQNS
Ga0214921_10000028368F007365N/AMSSLKEISIRDYVSRIDFKRDDWKLSQMKEDMRRFLGEEPAIEIIYKKDVMINEVTGRAQEFKDIEMVQIIFTDTDDRFKKLEFKISDIL
Ga0214921_1000002865F044482N/AMKHLSTFRLFEALDNSTLVTIEQFLERIQIPNQLRPTIVSWWNQNRSEIRIHFFRFNTTEAIGGVIIDGNTIVLNDDLHIRPMPPHVKLFLALHESRHCDQHRMENSITQYFDSVVRNDKQSFMRHYVELEKDANDFAIQSMRACGFDRQMNFEERMLRSNELAGEMVYQMMSTDIQRLNPVDFFDLLKKQIGV
Ga0214921_100000287F002045N/AMEFFCVYCKTRKKFDKYVKTNRIKNKYIIDIKKIIDEEEVDFINDKTYLKILVFNKIQQAVEKKKDIYYIPDFEQDFSIEKLLNLKKMLGENNFNVLVFYNEFRRNPDIIDDVFGNLSKFSNSQIIRDY
Ga0214921_100000289F032658N/AMLKKFGQFITEEASPRLPKSEEYWLKKGKEGKKVAIYTHDDMDGIFSAIEVKKYLLNSGFQIVKYGIINYSEGWKYTTVDPKLINVVVDFANMPGDKRDQYIDYYLDHHGSFTEFELDKYKSSPIQKKKTASAYEAICQNLGVPQDELTVSVIDMIDAAKYTDYEVDWSRLLDFNLSDIKKSDKVRLEFAAAFNQFLKRSDHKTLISVIHNCPDASIYSVFNVMKKVYPEHNVFPKTGQKKDFLSDSQWRMTQMAKRTRGQNSYKKKYTTQTEFLTDFSYGAGIKLDGYQIIGNLAFIPTGTWANALRARTIISDDFKSGLIEEEPNFILLQYGGTLQVCSYSKIDEIQNLPQYKDGSTINDLGIYMTSLLKNFQQHLGYYNPDTSLGQDEITVSGGHGGIGSISNIFGDCQVSPYEGCRFVDMFKNKIISDLSGVQFNIKTKWNEPVESKSKEPAMDNKVLNIEDVTKLDTKGDIIKENNRVIAKFKKFNLGGLR
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