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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300023174 Open in IMG/M |
| Scaffold ID | Ga0214921_10000074 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 177287 |
| Total Scaffold Genes | 164 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 53 (32.32%) |
| Novel Protein Genes | 6 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (50.00%) |
| Associated Families | 6 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Varidnaviria → Bamfordvirae → Nucleocytoviricota → Megaviricetes | (Source: IMG-VR) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Georgia | |||||||
| Coordinates | Lat. (o) | 34.2611 | Long. (o) | -83.95 | Alt. (m) | Depth (m) | 2 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F029103 | Metagenome | 189 | Y |
| F030429 | Metagenome | 185 | Y |
| F037070 | Metagenome | 168 | Y |
| F048777 | Metagenome | 147 | Y |
| F073550 | Metagenome | 120 | Y |
| F088911 | Metagenome / Metatranscriptome | 109 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0214921_10000074104 | F048777 | AGG | MKVSLPDWLDTKVFSAIGLSIVILIVVLGFFKKSEPHGFQGFKNKTVLDTSKDTTMFPYTTTPIKNLDQYELEAVFTNEGDRELKKQQINQMTRRYPLDWTNYPPNASKFQSEQAKYIEGFSSDSSAKELNEPFKEMGDGNLSPPDTAAIEKEEKDILATYRPRKSGSMTSYDAYDAQKLLEEIYKPKGIKPIVKRKEGNVFEVVSTRSLKNKVEYEDALPDAPTSSGSGIGPGEAVIEVPPTATEVAAGRDPFYEPTTSTRSSRTDYMRWTPGLERMFAPTYPTTDWIGQPK |
| Ga0214921_10000074108 | F073550 | N/A | MSGVPQLPASTLFDVRLKQDKARQLAYNQILEQALQKVAHCATAPNQPTFVYYNVPPFVLGLPSLDLKDCIVYVVFQLRAQGYEVRYTYPNLLWISWAHHEREYLLEKNPIVQSMMPPKMEGPEKRRGASQVSLQQAATSTPNAGPILRASDYTPPASFVETMERPSPYAKPKQTVRFSDSKDPLGNVLDELWKI |
| Ga0214921_10000074127 | F030429 | N/A | MGIVWRCQDYKFSKDAVHKRLERIAKERGLPLTIIRKQWHLDSKVSDEQAQSEELRKDGLPYETSLLHNGFSVARMSLQDRHYIRSIVDSLGENAHVLNGDRILILYEADLLSTESVLLLQRLLEMRSESGNISVWMTVRETVPYKLNDWFLDIPVPLSAPLYHPWSPVIWDWVQTTRKLKVHKIEHIEQLRNTIYALLQRNIRWFDIHQIFLELILEHYRDLGSELTEKLLRCLANSPNTAVGHTLTSYRIPIAWESLFVSLYDNLVGTL |
| Ga0214921_10000074144 | F088911 | N/A | MTLTNVDASQITMKQRQKALSTWKSNNDVLVNIGRSVLREQPTFQSNEVVIMRKQGGCKCTQDALANPYEFNGLSQCGCGAGN |
| Ga0214921_1000007472 | F029103 | AGG | MGPSSLVNAVMRAMVEGFTNPSGAESHRQDPIYAEAIAVILTFFISLMLVSLIGLWLWNFSVVPLFEFARPAKSVFQILGLMVFMVLICP |
| Ga0214921_1000007492 | F037070 | AGG | MSSAISPMNPMGTPFEKGSPTEQYPIQGSKTTPFFPPVCLNSHWDPTMIYKRSVPTSLVPLPVDFRPYTKVCLEYRTSAVGQKAPEVSDDIVFPQGGEVYPPDRYIRAIDKESLLRRLDRPLGTCDDKQYEPPQNGDMYVDRMLVPTSAKPPSRFVEEISMPQALLRAGTYHCRADADQRNWDRSPRLFNNSTKQDRYKGPTEPPRQNVWNDARRCEISGPTSDKMTPDGCRAWGC |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |