NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214921_10000118

Scaffold Ga0214921_10000118


Overview

Basic Information
Taxon OID3300023174 Open in IMG/M
Scaffold IDGa0214921_10000118 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)151419
Total Scaffold Genes192 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)97 (50.52%)
Novel Protein Genes8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (62.50%)
Associated Families8

Taxonomy
All Organisms → Viruses(Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001246Metagenome / Metatranscriptome737Y
F013631Metagenome / Metatranscriptome269Y
F053990Metagenome / Metatranscriptome140Y
F054636Metagenome / Metatranscriptome139Y
F056606Metagenome / Metatranscriptome137Y
F059435Metagenome / Metatranscriptome134Y
F073458Metagenome / Metatranscriptome120Y
F081075Metagenome / Metatranscriptome114Y

Sequences

Protein IDFamilyRBSSequence
Ga0214921_10000118109F081075AGGAMRLHIKKICNDTIQQHIDRMHDLCEEGRPRDAECIYSEIRDWVIQKENLEVLSLDYISGNFLDF
Ga0214921_1000011813F053990AGGAGGMIDTCVLHDDYEDFAQKFLGVDYEDFVGLQLGLPDEDEIEIEYSLSI
Ga0214921_1000011814F073458N/AMSANLVALAAELVDTNPAGAQLIVNITKAETGAELVEALDNYDATVLENYTEAVDDGYVTLTDADGVVTAL
Ga0214921_1000011820F013631N/AMITDVFHYTTSRWDWQTGDVNQMWIQEIEEAPDVYRYIAVAYNPRKDTSMVMSNPRGYFDTLHWVRKFCGSFSILP
Ga0214921_1000011836F054636GAGMRLDFDDYERDMLIDTIQHRLDTDKILVINDSLREEIEDLLRKVEENEYL
Ga0214921_1000011837F059435AGGMNTYNISVNGNEILSQVPQSNLQDNLRIIRGLVWTSGGNDGDIQVEINKDETICNE
Ga0214921_100001184F056606N/AMTIRAEQIVNATLELTLRPQSEDRKKVVACVIRETADRLCTDLGEMECPIDKLRQIADEVEAL
Ga0214921_1000011897F001246GAGGMSVVIAWALANQALIATVLFAVSEALGANPKVKSNGILSLILLQVQGQLKSKGAKDLTP
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