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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300023174 Open in IMG/M |
| Scaffold ID | Ga0214921_10000280 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 100571 |
| Total Scaffold Genes | 102 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 45 (44.12%) |
| Novel Protein Genes | 10 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (50.00%) |
| Associated Families | 10 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Georgia | |||||||
| Coordinates | Lat. (o) | 34.2611 | Long. (o) | -83.95 | Alt. (m) | Depth (m) | 2 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F009669 | Metagenome / Metatranscriptome | 314 | Y |
| F010817 | Metagenome / Metatranscriptome | 298 | Y |
| F014229 | Metagenome / Metatranscriptome | 264 | Y |
| F020649 | Metagenome / Metatranscriptome | 222 | Y |
| F028084 | Metagenome / Metatranscriptome | 192 | Y |
| F032162 | Metagenome / Metatranscriptome | 180 | N |
| F034466 | Metagenome / Metatranscriptome | 174 | Y |
| F038565 | Metagenome / Metatranscriptome | 165 | Y |
| F056412 | Metagenome / Metatranscriptome | 137 | N |
| F080893 | Metagenome / Metatranscriptome | 114 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0214921_10000280102 | F056412 | N/A | MKRKTKLEILLGNLDKASADLKKAVEESQKRLDESFAKYEHKVEVAHHNSMIINEKQ |
| Ga0214921_100002802 | F034466 | N/A | LLVVEYLKEMDNQLKNLLLHSYEKSLPSKKDTEDFINNFQQYRIQKATQRKTHYSIALIVLLIITALGSIALKETTNKLDIQTASGQIEK |
| Ga0214921_1000028032 | F038565 | N/A | VTNKKKFNFPESLLKQIDECSFGGYIMFNFSSKGEPQVYTKFDNQINAMALLYYVNTWSQSVDQLNLEATTDQIAKKNLEEDDFNDSEEDRD |
| Ga0214921_100002805 | F020649 | N/A | MAIKIKNWWKDLKSYDRLFFISFVPAMLFTVWGLSDLYINYFDLLSKEDHLQFFLRIFFPISLATFITVLERNKRQKLIKDIKNYLKE |
| Ga0214921_1000028076 | F028084 | GGA | MKKLILILPLLFLISCSEPNYESRELSTKYPETPTSGSAYDVTEELYGKKK |
| Ga0214921_1000028079 | F010817 | AGGAG | LKKFASVLVLNLFLVSCATVTPNKIEDDKSSYDASTPKQYQKDNGGLISFIGGDALITPQARERYNNLIAMYKIKFKKEKAIELKADSGIKPYKDNFNNELYIIDSEHLVYFGVLNSWLKEKVPQDNIVDKVIDKVNN |
| Ga0214921_1000028081 | F014229 | GGAG | MNKLQLAAVALLSIFLGACATTPTGQVDPATSVSNALPYVKPAVVLACTVVLDQALSANDRVEKAKMINHVATIVEGLTVGTAPTPEQLQKALTDYLPEEKTHWVNYVSVIKDIYAQQFARLDGNTALAIKVLNAIASGCKDATASYVE |
| Ga0214921_1000028082 | F009669 | N/A | MKTMLSKIFGPNWRSSSSGIATVVAVCTAIAIHSDPSLVAFLPDQAEVYILGISKLVAVVSGIIFALTVKDAAVTGGTVAQTTEAKDRTNGENI |
| Ga0214921_1000028095 | F080893 | AGGAG | MNHTIKITDTNILEGEKANPQNCAIARAIKSKMKKKITNVSVLPTQVILTIDKKMFIAKMPKAGTNFIKRFDRGQAVNAFKLDLKFKKGFALV |
| Ga0214921_1000028099 | F032162 | AGG | MKQNLKISYQTFGENNAYLLEGSIKQINHFFNSIYNWEGTNGKLHDMGNGKAFYFYAHPDDVMHALTKVALHSLINKINAKGRKGGLLDLAKAKAQSIVDAMEQTCFLWGASSSEGFTLGTISAEKPSDYCGAVSNGRD |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |