NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214921_10000370

Scaffold Ga0214921_10000370


Overview

Basic Information
Taxon OID3300023174 Open in IMG/M
Scaffold IDGa0214921_10000370 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)85808
Total Scaffold Genes95 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)34 (35.79%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Associated Families6

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007255Metagenome / Metatranscriptome354Y
F014361Metagenome / Metatranscriptome263Y
F015835Metagenome / Metatranscriptome251Y
F016120Metagenome / Metatranscriptome249Y
F029976Metagenome / Metatranscriptome186Y
F079583Metagenome115Y

Sequences

Protein IDFamilyRBSSequence
Ga0214921_1000037014F014361N/AMSLLSAFNTQLVNLFDELCSTFPEDKEIKMATEAIKGAKKINPRLILDLFVEHVYKECSTAVYERNAVLFRQIAQRKISNQFNEMISALSIFDKYWDTMGQKNQDVIWQYLKVLCILCEKATAQ
Ga0214921_1000037029F007255GGAMKPFPNADKRGVFLSNEQQMMPVWFPWMLVGGIVFIVLSFIGAKYKDKEYRNIQFLQDFISGSILIAFTGVLVPDVFPALSLPSGLPDFPSMSTDDVDLQVGPPRLAGR
Ga0214921_1000037041F079583AGGAGGMVETIGNWRETQERRRSKIKSAVSTKMTSIGAEFMYHLVVNNIAPIMASSVAGIYTGYFSGRNAPTPTLVRSDIDDERELDLLQMDRMLKWMSLIFEEKFHPVEDTTPLEEEKEETHKAYKKELYSIYVTICSDFKQYQNWKKYNSNIWVFSSYRNKNTKALARKILGDIKLFHEGLKMFSMFEKL
Ga0214921_1000037047F029976N/AMETCKEIQGNDLGYSKNAKDWAIRRRVSKAAMIGYETVSETAKASVFNEGLINLRMLKVQSSLLGNMEGNTTWGGLAYSN
Ga0214921_1000037081F016120N/AMSKQLPPVQRQSMEEATAEAEARPLDYQPKERAKFIRTMLQDIAKWMAKGDSEQSIRDRVPEFIEQYPELFKKIINKQDLSPIQTMLSMLDRIGQGNLSQHQASVIVGKKLVDQFVSPQLNGASGGTSGR
Ga0214921_1000037089F015835GGAMADPGIATYVRYWLHYGNMASSFFKQFGAVRKIRDDYEKQIIALLQQNGMEKATIQINNGRINVADKREPNQLSLSKVEELLHGYFMQRGGKDETMEIMTFIRSNRGYSTYKVLKQSGMTPPQGGTQGAQPQGGINKLL
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